PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_011081-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HB-other

Protein Properties

Length: 375aa MW: 39443.3 Da PI: 9.1463

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_011081-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.6	5.5e-05	11	36	31	56
HHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 31 eeLAkklgLterqVkvWFqNrRakek 56 +L + l+L+ V WFqNrR +k NNU_011081-RA 11 VHLERGLRLQPLPVAKWFQNRRVPWK 36 5677778999999*********9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MENNLELEWK VHLERGLRLQ PLPVAKWFQN RRVPWKIKQQ QDCEKRLLER GEITEKIRIK 60 CVFDYAPPPN RNFLYHDPKQ VLEGEDHIAE RSQNSLQMHE EVRTLFENLS KRIVLHNALP 120 KEANPGSGGR QMGGGSGGNA NTYDSRVDVA RYMPPQIARC GFPAYGAPGY GYGAASNGDG 180 YGRYGVGGYG SANAGYSGPA GAYANPNAPN AGYVSGPSAP RSPWSNQAPT GFVGYGSTAH 240 WNAPSGAAGV GNAVYAPTGQ SPSGAANYGN HGYEYGGYGG GDGSYGNPSS YGAIGGHAGS 300 APNSSSGAGA GGGEQQGAGG GYIGSGYGDA NGNPGYPNAV WRSDASQARS YSIVTPPIGT 360 NKKIIQMHKN LPLLR

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MENNLELEWK VHLERGLRLQ PLPVAKWFQN RRVPWKIKQQ QDCEKRLLER GEITEKIRIK  60
CVFDYAPPPN RNFLYHDPKQ VLEGEDHIAE RSQNSLQMHE EVRTLFENLS KRIVLHNALP  120
KEANPGSGGR QMGGGSGGNA NTYDSRVDVA RYMPPQIARC GFPAYGAPGY GYGAASNGDG  180
YGRYGVGGYG SANAGYSGPA GAYANPNAPN AGYVSGPSAP RSPWSNQAPT GFVGYGSTAH  240
WNAPSGAAGV GNAVYAPTGQ SPSGAANYGN HGYEYGGYGG GDGSYGNPSS YGAIGGHAGS  300
APNSSSGAGA GGGEQQGAGG GYIGSGYGDA NGNPGYPNAV WRSDASQARS YSIVTPPIGT  360
NKKIIQMHKN LPLLR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	134	GGRQMGGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019053930.1	1e-105	PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like
TrEMBL	A0A1U8Q775	1e-104	A0A1U8Q775_NELNU; heterogeneous nuclear ribonucleoprotein 1-like
STRING	XP_010262417.1	7e-60	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	3e-07	homeobox 3