PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011086-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family LBD
Protein Properties Length: 223aa    MW: 24692.7 Da    PI: 5.168
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011086-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.51.2e-3971071100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    +C aCk+lrrkC+++Cv+apyf+ eq +++fa++hk+FGasnv+kll++lp ++r++a+ ++ yeA ar+rdP+yG+v++il+lqqq+ +l++e++
  NNU_011086-RA   7 SCGACKFLRRKCSNGCVFAPYFCYEQgANHFAAIHKVFGASNVSKLLSHLPVHNRSEAAITISYEALARMRDPIYGCVAHILALQQQVVNLQEEIE 102
                    6*************************89*******************************************************************9 PP

         DUF260  96 llkee 100
                     l+++
  NNU_011086-RA 103 FLENQ 107
                    99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.7916108IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-377104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MTGVGSSCGA CKFLRRKCSN GCVFAPYFCY EQGANHFAAI HKVFGASNVS KLLSHLPVHN  60
RSEAAITISY EALARMRDPI YGCVAHILAL QQQVVNLQEE IEFLENQVAN LANDAVSHQS  120
SQQATSEPDY WFQFSSQRDP MDAQYCLNQQ PLHHPSNAAV NATSTLMLDN DEMNAQLPPL  180
YMLDNQSSSY CHSATSPDAL ERILSMGMQQ EILPTDPWFG NAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3631027105LOB family transfactor Ramosa2.1
5ly0_B3e-3631027105LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262592.11e-168PREDICTED: LOB domain-containing protein 33-like
SwissprotQ9LHS86e-57LBD33_ARATH; LOB domain-containing protein 33
TrEMBLA0A1U8A7P01e-167A0A1U8A7P0_NELNU; LOB domain-containing protein 33-like
STRINGXP_010262592.11e-168(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.12e-59LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]