PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011095-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 313aa    MW: 34503.4 Da    PI: 7.5798
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011095-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000176183123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C + F++   L  H+++H
  NNU_011095-RA 61 YTCSFCRREFRSAQALGGHMNVH 83
                   9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.09E-65887No hitNo description
PROSITE profilePS5015711.2196188IPR007087Zinc finger, C2H2
SMARTSM003550.00616183IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-56184IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MPGGSAMERG RYWTWTKVQE CVGSHIQPST ASLYNDSWEE QAFAVDSAGH LGGCIWPPRS  60
YTCSFCRREF RSAQALGGHM NVHRRDRARL KQSPTSHDEI LHHHHQTHYP DHQNPCTSLG  120
VQYPSQLCTL VYSPNPNSNP GVVSSSKSTS RVSAPSTQEN CSEQALVSPS YSSSTVQQHR  180
KGSLLSPPPS WSDSVAVKVL ALSDAKIEGE KIPITQESGC RVSGDYAKPD LAVSLNLVVH  240
RNRSPGTSAG DDDDDQETIS RKRKRTDTST LPFFLEPSSV DLRHLQSEVL GVCPGSMEDL  300
DLELRLGRRP KVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-135683229superman protein
2l1o_A4e-135683229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262603.10.0PREDICTED: uncharacterized protein LOC104601105
TrEMBLA0A1U8AJB20.0A0A1U8AJB2_NELNU; uncharacterized protein LOC104601105
STRINGXP_010262603.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.13e-26zinc-finger protein 10