PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_011217-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 377aa MW: 41865.9 Da PI: 8.758

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_011217-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.6e-05	139	162	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++Cp+Cg+ F +L++H+++ H NNU_011217-RA 139 FPCPICGEIFHKTQLLEQHQSLkH 162 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.681	139	167	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	141	162	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	4.51E-17	164	376	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.1E-5	174	281	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain
Gene3D	G3DSA:3.90.228.10	3.9E-6	310	376	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MATTTVGSLF NGFIALLLLL LHLGCFVFST TADGPSTKKR KVSPQTSTSP SPPPRLKFNS 60 HKALSSSWSY IKRIFSFNHP NKGVDTHPTT PTLSSARSSQ QLTPEPIVSA PPRKKPTLSK 120 KETDISVDHS SFPLRNDIFP CPICGEIFHK TQLLEQHQSL KHAVSELLDG DSGKNIVQII 180 FKTGWDDRQK NPTIHRILKI HNSPKILARF EEHREYVKLK AARSGVRKRD ERCIADGNEL 240 LRFHCSTFVC DLGQNGNSSL CTQQYCSICG IIRSGFSTKM DGTSTLSSSW RAHMALPDEI 300 EEDFAFMNVK RAMLVCRVVA GRVGIIGRDE DIVDKDELGF DSVVGSGGGV QSRMDEDELF 360 VFNPRAVLPC FVIVYSV

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MATTTVGSLF NGFIALLLLL LHLGCFVFST TADGPSTKKR KVSPQTSTSP SPPPRLKFNS  60
HKALSSSWSY IKRIFSFNHP NKGVDTHPTT PTLSSARSSQ QLTPEPIVSA PPRKKPTLSK  120
KETDISVDHS SFPLRNDIFP CPICGEIFHK TQLLEQHQSL KHAVSELLDG DSGKNIVQII  180
FKTGWDDRQK NPTIHRILKI HNSPKILARF EEHREYVKLK AARSGVRKRD ERCIADGNEL  240
LRFHCSTFVC DLGQNGNSSL CTQQYCSICG IIRSGFSTKM DGTSTLSSSW RAHMALPDEI  300
EEDFAFMNVK RAMLVCRVVA GRVGIIGRDE DIVDKDELGF DSVVGSGGGV QSRMDEDELF  360
VFNPRAVLPC FVIVYSV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010262797.1	0.0	PREDICTED: uncharacterized protein LOC104601227
TrEMBL	A0A1U8ABQ6	0.0	A0A1U8ABQ6_NELNU; uncharacterized protein LOC104601227
STRING	XP_010262797.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-105	C2H2 family protein