PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011274-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TALE
Protein Properties Length: 870aa    MW: 94813.1 Da    PI: 6.8326
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011274-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.17e-096797112254
                    SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    ++yp+ +++  LA+++gLt +qV++WF N R +
  NNU_011274-RA 679 HPYPTDADKLMLATQTGLTRNQVSNWFINARVR 711
                    89*****************************87 PP
2BELL1071.2e-34530598472
           BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    e q++kakLl ++eeV++rYkqy+eq+q+v+ssFe vagl +a+p+t+lAlk +SrhF cLk ai++q+
  NNU_011274-RA 530 EFQRRKAKLLYMQEEVCRRYKQYQEQMQMVVSSFESVAGLSAATPFTALALKNVSRHFHCLKSAISDQL 598
                    789***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.0E-47434596IPR006563POX domain
PfamPF075265.8E-42439595IPR006563POX domain
PROSITE profilePS5007111.726652715IPR001356Homeobox domain
CDDcd000869.03E-12655716No hitNo description
SMARTSM003891.4E-9655719IPR001356Homeobox domain
SuperFamilySSF466896.42E-17657721IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-27658719IPR009057Homeodomain-like
PfamPF059209.5E-18672711IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MSEGFDSECF NSTTTNLESS LLGISNFKPE SHVAQQSRRD KLRVQHNGSQ SHHTQDFSHP  60
LVQLPRDAGL NPDLIQARNV RNCGLLYDPT IVSSEMLNFS MSNHCLLTHK DSLLHEGSGA  120
DQSCRPVGTD GSSFVNSSNP TSSNFNPLAK PGDTPNPMYW KGLGSQQSCD WIVSYVNGST  180
SNACNQTTSL GGAVISGMVK DNSGSASTLY LKPGHGGYPD VQSSLTNRST ELSSQNSQKQ  240
YESMQYSSPP FYQNTLQEVV TSSNIENQGF EMASFVQQGV RETGSWVDGG NELALLPVFG  300
SQASASRLNI AGAWAHRPVD GSHQWNSDLG FGINKSSEGN LETIGSDSTL QGLSLSLSSH  360
QPSELHAAQF GERFRSGSLQ PRTGIFNGSQ DSRSNTSAYS KPLIGNKGYV NSIQGIMNSS  420
AYERRSSGPL GPFTGYATIL KSSKFLKPAQ QLLDEFCSVT GPKLVKTSEP SEKELGDISM  480
PCDTGDAGNE TSVTVRGGNT GGSSSSFYSS IEASGEAAVG SGFYKSYHPE FQRRKAKLLY  540
MQEEVCRRYK QYQEQMQMVV SSFESVAGLS AATPFTALAL KNVSRHFHCL KSAISDQLRH  600
ITKVLGEDLS SPTNGTTNSR GDTVAPRMKF INHCFQKPKS TGDGLGFLEP QQHVWRPQRG  660
LPERAVAILR AWLFDHFLHP YPTDADKLML ATQTGLTRNQ VSNWFINARV RVWKPMVEEI  720
HMLETKGSAE MNLNTGKNEG RPVSSGENVH AGDESSHKLM IEALSEKQSE CSGSGPVLNT  780
ENGRNPDQWN QGERARIHSQ LPSGIDNGLI GFMPYHQNGI DMGGLGAVSL TLGLRHSVEG  840
LQQHQQPQQQ QEEHHLMKHF GGQIIHDFAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-16661718158Homeobox protein Meis1
4xrs_B4e-16661718158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262878.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_010262879.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_010262880.10.0PREDICTED: BEL1-like homeodomain protein 4
RefseqXP_010262881.10.0PREDICTED: BEL1-like homeodomain protein 4
TrEMBLA0A1U8AKQ20.0A0A1U8AKQ2_NELNU; BEL1-like homeodomain protein 4
STRINGXP_010262878.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.12e-83BEL1-like homeodomain 8