PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_011278-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB_related

Protein Properties

Length: 630aa MW: 70288.8 Da PI: 6.7953

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_011278-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.1	9.9e-09	500	547	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +l+d+v q+G g+W+ I r + Rt ++k++w+++l NNU_011278-RA 500 WTLSEVIKLIDGVSQYGVGRWTEIKRLLFsssAYRTSVDLKDKWRNLL 547 ******************************99**********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.747	492	551	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-11	494	553	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.51E-15	494	554	IPR009057	Homeodomain-like
SMART	SM00717	6.5E-10	496	549	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-6	500	547	IPR001005	SANT/Myb domain
CDD	cd11660	6.33E-18	500	548	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 630 aa Download sequence Send to blast
MFGNQQKNFG CGTMEDASGN TSMTPSEKEN ALTYKLVRVD GDGSYLPTTE DELEVQHLLA 60 EPRNDKVLVD NILCYNSGSS EKCLTIEDFP CAVDYDHMKT SSGMLHANSS EGEREESKFE 120 FLDGMFHGIG EGDLHVPNGL STSCDDYLLD TEYAERVPDL DYGSCEGSHV GNLRLESQPS 180 CLSGKNSITQ MPDLTETIPV LESTSDQSEF LLDKMTIYDL QEAFRTTFGR ETSVKDKQWL 240 KRRISFGLQN LVEFGDVSDL LESGIPNGNE GDMIFTSSND SSGRMQSLFT NVLGNVAKPV 300 SQDVERESMV AGEDLITGSS DAGKTFGVLD LGDGEGVLVA PKRLRKPTRR YIEESSDLKS 360 RYSSGRVETP TSSRDKILRV KSHSQHNRKG LGTVPLVSRQ DYLGGTGIQV PFGLRVRKGR 420 PKKNTFLVRK MFTSLLSWKS SLRSTSLAVF MKGRDSENEM EDRNSYMEHS PPESQDDMSD 480 DYATTRSGKA GVRRKHHRLW TLSEVIKLID GVSQYGVGRW TEIKRLLFSS SAYRTSVDLK 540 DKWRNLLRAS CAQMQSKREV EQGRKHAYRP IPPSVLRRVS ELAIIYPYPR ERKSKSSRTS 600 IISPSIAAAA ATPSSDTPAN SSERIILRKR

Sequence ? help Back to Top

Protein Sequence Length: 630 aa Download sequence Send to blast

MFGNQQKNFG CGTMEDASGN TSMTPSEKEN ALTYKLVRVD GDGSYLPTTE DELEVQHLLA  60
EPRNDKVLVD NILCYNSGSS EKCLTIEDFP CAVDYDHMKT SSGMLHANSS EGEREESKFE  120
FLDGMFHGIG EGDLHVPNGL STSCDDYLLD TEYAERVPDL DYGSCEGSHV GNLRLESQPS  180
CLSGKNSITQ MPDLTETIPV LESTSDQSEF LLDKMTIYDL QEAFRTTFGR ETSVKDKQWL  240
KRRISFGLQN LVEFGDVSDL LESGIPNGNE GDMIFTSSND SSGRMQSLFT NVLGNVAKPV  300
SQDVERESMV AGEDLITGSS DAGKTFGVLD LGDGEGVLVA PKRLRKPTRR YIEESSDLKS  360
RYSSGRVETP TSSRDKILRV KSHSQHNRKG LGTVPLVSRQ DYLGGTGIQV PFGLRVRKGR  420
PKKNTFLVRK MFTSLLSWKS SLRSTSLAVF MKGRDSENEM EDRNSYMEHS PPESQDDMSD  480
DYATTRSGKA GVRRKHHRLW TLSEVIKLID GVSQYGVGRW TEIKRLLFSS SAYRTSVDLK  540
DKWRNLLRAS CAQMQSKREV EQGRKHAYRP IPPSVLRRVS ELAIIYPYPR ERKSKSSRTS  600
IISPSIAAAA ATPSSDTPAN SSERIILRKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010262885.1	0.0	PREDICTED: uncharacterized protein LOC104601289
TrEMBL	A0A1U8AKQ7	0.0	A0A1U8AKQ7_NELNU; uncharacterized protein LOC104601289
STRING	XP_010262885.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	2e-61	TRF-like 6