PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011379-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ARF
Protein Properties Length: 895aa    MW: 98413.7 Da    PI: 5.6495
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011379-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.95.8e-21129222189
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f+k+lt sd++++g +++p++ ae++       +++++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F + + se
  NNU_011379-RA 129 FCKTLTASDTSTHGGFSVPRRAAEKIfppldysQQPPA--QELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRASPSE 222
                    99*****************************8544444..48***********************************************9554444 PP
2Auxin_resp89.94.6e-302172831883
     Auxin_resp  18 rastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                    ras+seFv++++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldp+rW+nS+Wr+L+
  NNU_011379-RA 217 RASPSEFVIPLAKYYKAVYgNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPIRWKNSQWRNLQ 283
                    89*****************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-39118223IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-36120223IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-18128225No hitNo description
PfamPF023627.8E-19129223IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293129231IPR003340B3 DNA binding domain
SMARTSM010195.8E-20129233IPR003340B3 DNA binding domain
PfamPF065076.9E-25217283IPR010525Auxin response factor
PROSITE profilePS5174527.084763848IPR000270PB1 domain
PfamPF023095.1E-7763848IPR033389AUX/IAA domain
SuperFamilySSF542773.86E-7775841No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 895 aa     Download sequence    Send to blast
MKVPANGAAA TANACEGERK SINSELWHAC AGPLVTLPPV GSYVVYFPQG HSEQVAASMQ  60
KDIDAHIPNY PNLPSKLICL LHNVTLHADA ETDEVYAQMT LQPVSTYDKE ALLQSDLALK  120
SNRPQTEFFC KTLTASDTST HGGFSVPRRA AEKIFPPLDY SQQPPAQELV ARDLHDNVWT  180
FRHIYRGQPK RHLLTTGWSL FVSGKRLFAG DSVLFIRASP SEFVIPLAKY YKAVYGNQIS  240
LGMRFRMMFE TEESGTRRYM GTITGISDLD PIRWKNSQWR NLQVGWDEST AGERRNRVSI  300
WEIEPVAAPF FICPPPFFRS KRPRQPGMPD DDSSDLDNIF KRTMPWLGDD ICIKDPQTQN  360
AVLPGLSLVQ WMNMQHSSLG NSTMQPDYMR SLAGPVMQNL AAADISRQLG LPGSQILQQN  420
NLNFNTQRPL QQVQQLDQLA KLPTTLNQLG SVMRPQQLDD IIQQHQTQPK LPQQQPVTLA  480
ELPGQLVLPP APTTNLLSTT GSSVLTATGG AQSGLTDELP SCSTSPSTNN CPNVAQPIIS  540
TRPHCSMALP EEMTQSAATL LSPSTLEAMS SRPNLVRDLQ QKPDVKPSIP ISKSQTQGVV  600
APQTYLNAAS QMDCLDTSST TSVCLSQNDG ALQQNFPYSS VNPQSMLLRD ASQDGEVQTD  660
PRNNTLFGVN IDGPLGIPLT PDPLLSKGIG SGKDFSNNLS SGSMLANFGN SKEAQQELSS  720
SIVSQSFGVP DIAFNPLDST INDNGFLGRA PWAPPPPQFQ RMRTFTKVYK RGAVGRSIDI  780
TRYSGYDELK QDLARRFGIE GQLEDRQRIG WKLVYVDHEN DVLLVGDDPW EEFVNCVRYI  840
KILSPQEVQQ MSLDGDLGTG VLPNQACSSS DGGNAWRNGH CDQNSGNPSA GSYDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1281730445388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024967774.10.0auxin response factor 19-like isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A0D9WTU40.0A0A0D9WTU4_9ORYZ; Auxin response factor
STRINGLPERR06G22130.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19