PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011422-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family RAV
Protein Properties Length: 368aa    MW: 42160.4 Da    PI: 6.9158
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011422-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2301.3e-092870149
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaa 49
                   s+ykGV   + +grW A+I++      +  r +lg+f+++e Aa+ + +a
  NNU_011422-RA 28 SRYKGVVPQP-NGRWGAQIQE------NhHRLWLGTFDSEEAAARSYLRA 70
                   78****9888.8*********......44**********88888877665 PP
2B31079.4e-34129232199
                    EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                    f+k ltpsdv+k++rlv+pk++ae++     g + e++  l++edesg+sW+++++y+++s++yvltkGW++Fvk+++L++gD+v F++ + ++ +
  NNU_011422-RA 129 FEKPLTPSDVGKLNRLVIPKQHAEKYfplggGDSGEKGLLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKEKRLDAGDVVSFERRKLNGDR 224
                    99****************************9555568889************************************************65448888 PP

                    .EEEEE-S CS
             B3  92 lvvkvfrk 99 
                    ++++++r+
  NNU_011422-RA 225 FYIRWRRR 232
                    89999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.07E-182886No hitNo description
SuperFamilySSF541711.31E-132884IPR016177DNA-binding domain
PfamPF008478.2E-62870IPR001471AP2/ERF domain
SMARTSM003801.3E-192990IPR001471AP2/ERF domain
PROSITE profilePS5103218.1492984IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-152984IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.107.0E-43120233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.66E-33125232IPR015300DNA-binding pseudobarrel domain
CDDcd100178.83E-31128231No hitNo description
PROSITE profilePS5086315.143129233IPR003340B3 DNA binding domain
PfamPF023623.5E-30129232IPR003340B3 DNA binding domain
SMARTSM010191.9E-27129233IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MATNHFPSEL QEGFWWTTQD PATRIPTSRY KGVVPQPNGR WGAQIQENHH RLWLGTFDSE  60
EAAARSYLRA VSMFGGRDSA LNFNPTQHDN NEEDLEDQQT TEDRETVDND DTDHANQHHH  120
HQEEREHMFE KPLTPSDVGK LNRLVIPKQH AEKYFPLGGG DSGEKGLLLS FEDESGKSWR  180
FRYSYWNSSQ SYVLTKGWSR FVKEKRLDAG DVVSFERRKL NGDRFYIRWR RRPVPVQDSG  240
AVQEIPGPPM SAWTRVFYSA HPYPPHPHGP PPLLYQPDSL HHASIPTGTK SSCHSEPNYD  300
GELQATEAVR SEPGLPTRPS RSTHARRFAF TEPGSATASI YSTSRFKWLS GIQLFAYEKS  360
LRRSEDVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-511242333114B3 domain-containing transcription factor NGA1
5os9_B2e-511242333114B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262926.10.0PREDICTED: B3 domain-containing protein At2g36080-like
SwissprotQ9ZWM92e-73RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A1U8AK360.0A0A1U8AK36_NELNU; B3 domain-containing protein At2g36080-like
STRINGXP_010262926.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.12e-71RAV family protein
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]