PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011469-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family FAR1
Protein Properties Length: 126aa    MW: 14671 Da    PI: 10.4671
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011469-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.18.2e-2035115190
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                    +fY +Y++++GF vr++++ +s+ n+ +++++fvCske k++ ++ +          +  gC+a+l++ +++  kw+vtk+++eH+H+l+
  NNU_011469-RA  35 EFYVAYGRRTGFIVRIHHNLRSRLNNAVIDQDFVCSKENKDRISSAT---------CNLEGCNAMLRLALRDGVKWVVTKFVKEHSHKLM 115
                    6*************************************998887766.........7889****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1635115IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MAMTSLKNNQ LKHYLPMQMP WNHMLVWSLN QEIREFYVAY GRRTGFIVRI HHNLRSRLNN  60
AVIDQDFVCS KENKDRISSA TCNLEGCNAM LRLALRDGVK WVVTKFVKEH SHKLMSPGHG  120
GDRKGF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268144.17e-42PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1U8AYG92e-40A0A1U8AYG9_NELNU; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_010268144.13e-41(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.17e-17FAR1-related sequence 12