PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011507-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NF-YA
Protein Properties Length: 334aa    MW: 36190.5 Da    PI: 9.4885
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011507-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.51.9e-32169225158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    d p+YVNaKQy++Il+RR++Rak+e e+kl +k rkpylheSRh hA+rR+Rg+gGrF
  NNU_011507-RA 169 DGPIYVNAKQYHGILRRRKSRAKAEMENKL-IKVRKPYLHESRHLHAMRRARGCGGRF 225
                    57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.3E-36167228IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.285168228IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.5E-28171225IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-23171193IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860173193IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.3E-23202225IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MQTLCFKEHG GIARNHISQL SPVTPMPWWS AVGSQPASGE PFGQLKSLSA DHPSGGDQLT  60
DASRQAQRGV EQSTAQFTIL SEFSNVTSFK VSHPGDSRDS GKGQKTQQIP SAISRQSFPP  120
DYQACIELGL GQPMVCANYP YMDQYYSIFA TYGSQPTGRV MLPLNMPEDG PIYVNAKQYH  180
GILRRRKSRA KAEMENKLIK VRKPYLHESR HLHAMRRARG CGGRFLNTKS SKGGNDTGKT  240
GNSQPFQSSG SPSSEVLQSE SANANSSKEA SGGGSSLSGS EVTSMYSRGD FVCFQIDRLR  300
PSTFHSDIID SGQGTGIPNK WVAAANGCCN LLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-18171229462NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263040.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1
RefseqXP_010263041.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1
RefseqXP_010263042.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1
RefseqXP_010263045.10.0PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1
TrEMBLA0A1U8AKD70.0A0A1U8AKD7_NELNU; nuclear transcription factor Y subunit A-10-like isoform X1
STRINGXP_010263040.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.24e-49nuclear factor Y, subunit A10