PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_011524-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

YABBY

Protein Properties

Length: 153aa MW: 16916.1 Da PI: 8.1417

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_011524-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	192.5	1.9e-59	2	147	2	162
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 +++ +se+vCyv+CnfCntilavsvPstsl++vvtvrCGhC++llsvn+ q l+ ++ ++ ++++ + ++ + s+s+ ++ NNU_011524-RA 2 SLDVASEHVCYVHCNFCNTILAVSVPSTSLYNVVTVRCGHCANLLSVNMGALLQPLPLQDI---------QN----HNSSSEDSTKGSGSSSKCNK 84 67789*******************************************99999998883.........33....33333333344444455555 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162 +++l+ +++ pr+ p +rPPekrqrvPsaynrfikeeiqrikasnP+ishreafs+aakn +h NNU_011524-RA 85 VSMLD-TAENDQPRMLP-MRPPEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSTAAKNRSH 147 54554.45667899999.9*****************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.6E-64	6	147	IPR006780	YABBY protein
SuperFamily	SSF47095	1.83E-6	97	142	IPR009071	High mobility group box domain
CDD	cd00084	1.81E-4	109	136	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MSLDVASEHV CYVHCNFCNT ILAVSVPSTS LYNVVTVRCG HCANLLSVNM GALLQPLPLQ 60 DIQNHNSSSE DSTKGSGSSS KCNKVSMLDT AENDQPRMLP MRPPEKRQRV PSAYNRFIKE 120 EIQRIKASNP EISHREAFST AAKNRSHGQG EWS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019053973.1	1e-104	PREDICTED: putative axial regulator YABBY 2 isoform X4
Swissprot	Q10FZ7	1e-61	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	A0A1U8Q584	1e-102	A0A1U8Q584_NELNU; putative axial regulator YABBY 2 isoform X4
STRING	XP_010247851.1	8e-92	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	7e-58	YABBY family protein