PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011577-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 358aa    MW: 39403.3 Da    PI: 9.9545
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011577-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY993e-31285342359
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  NNU_011577-RA 285 DDFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLIVTYEGEHNHT 342
                    99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.7E-17236281IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-32272342IPR003657WRKY domain
PROSITE profilePS5081130.297278344IPR003657WRKY domain
SuperFamilySSF1182901.44E-26280342IPR003657WRKY domain
SMARTSM007748.0E-38283343IPR003657WRKY domain
PfamPF031068.2E-27285341IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAVDFMMGYR SDSFASANME ENAVEEAASA GLQSVEKLIR LLSQRQQQQH PKADMEMEMD  60
CRAVADVAVT KFKKVISLLG RTRTGHARFR RGPLGSSPPP QQNHDTDHSF SVSFTHKEED  120
MQPSGSRVYC PTTSIQRLPP FPPHHHHHLH HQNNNNSSHN HPPLSLPKNG VIERKESATT  180
ISFTSSPPIS AANSFMSSMT GDTDSKQPSS SSAFQITHLS QVSTAGRPPL SSSSLKRKCN  240
SSDDAAGKCG VSSGRCHCSK RRKSRVKRVV KVPAISLKMA DIPPDDFSWR KYGQKPIKGS  300
PHPRGYYKCS SVRGCPARKH VERALDDPTM LIVTYEGEHN HTRSVTEPSG SGLILESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-202793411071WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263444.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-108WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A1U8AD880.0A0A1U8AD88_NELNU; probable WRKY transcription factor 7
STRINGXP_010263444.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-65WRKY DNA-binding protein 7