PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011592-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 152aa    MW: 16578.4 Da    PI: 9.7153
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011592-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-172877255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  NNU_011592-RA 28 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPLAAARAYDTAVFYLRG 77
                   69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-362891IPR001471AP2/ERF domain
PROSITE profilePS5103222.512885IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-202886IPR016177DNA-binding domain
CDDcd000181.92E-272986No hitNo description
PRINTSPR003679.7E-122940IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-302986IPR001471AP2/ERF domain
PfamPF008475.7E-112977IPR001471AP2/ERF domain
PRINTSPR003679.7E-126787IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEGECCSTSS SSSTGGGGRR KGAKAEKPYR GIRMRKWGKW VAEIREPNKR SRIWLGSYST  60
PLAAARAYDT AVFYLRGRSA RLNFPEYFVA EAELQDMSAA SIRKKATEVG ARVDALATGG  120
NKTFNLSSCS STPSNKPDLN QTPNPESSED DD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-161788475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263467.11e-109PREDICTED: ethylene-responsive transcription factor ERF008-like
SwissprotO221744e-48ERF08_ARATH; Ethylene-responsive transcription factor ERF008
SwissprotQ8LC302e-48RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
SwissprotQ9FH945e-48ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A1U8A9R81e-107A0A1U8A9R8_NELNU; ethylene-responsive transcription factor ERF008-like
STRINGXP_010263467.11e-108(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.18e-51DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]