PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_011594-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

WOX

Protein Properties

Length: 216aa MW: 24472.7 Da PI: 10.0571

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_011594-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67	2.4e-21	80	139	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+a+++e+++++l +++ ++V++WFqN++a+e++ NNU_011594-RA 80 TRWNPTQEQIGILEMLYRGgMRTPNAHQIEQITAQLgkfgKIEGKNVFYWFQNHKARERQ 139 7***************99************************************97 PP
2	Wus_type_Homeobox	117.1	8.2e-38	80	141	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+ly+ G+rtPn+++i++ita+L ++Gkie+kNVfyWFQN+kaRerqkq NNU_011594-RA 80 TRWNPTQEQIGILEMLYRGGMRTPNAHQIEQITAQLGKFGKIEGKNVFYWFQNHKARERQKQ 141 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.025	75	140	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.15E-12	76	145	IPR009057	Homeodomain-like
SMART	SM00389	9.3E-7	77	144	IPR001356	Homeobox domain
CDD	cd00086	2.99E-5	80	141	No hit	No description
Pfam	PF00046	5.1E-19	80	139	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.6E-8	81	139	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MGSLNMKVHQ LARGLWEHEP SLTLGCKRLR PLVPKLTNGD SVSNLDLKSF IKPESSPKKP 60 AGSTDEKRQP VQVEAPSGGT RWNPTQEQIG ILEMLYRGGM RTPNAHQIEQ ITAQLGKFGK 120 IEGKNVFYWF QNHKARERQK QKRNSLGLTH SPRIAPPTTT VTLDPGREVE REEDSHYKRK 180 HRSWGVEFFG EDSSRLCGGE EGDKTLELFP LHPEGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010263471.1	1e-160	PREDICTED: WUSCHEL-related homeobox 4-like
Swissprot	Q6X7J9	7e-62	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	A0A1U8A813	1e-158	A0A1U8A813_NELNU; WUSCHEL-related homeobox 4-like
STRING	XP_010263471.1	1e-159	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	3e-64	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]