PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011612-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 437aa    MW: 47635.2 Da    PI: 6.51
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011612-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.38.6e-16216262455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  NNU_011612-RA 216 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 262
                    6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.2E-21209272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-20209274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.06E-17215266No hitNo description
PfamPF000103.0E-13216262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18218267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MADTYDQACS SPPPPSSFSH SLPPPPSRPA VEKSDEISLF LHQLLQSSSS SVCMPDRTKE  60
ISFSSPLPLP HPPPPGFFSS HPQSTSNALP GGYQLPPCGS SFLLPPSCDF RVRDGTSTAE  120
SSGAADFSSL ILSSSSFCLP DEAKETATTT TSARTGDCDA VIATVKRRKS PLDNDLDDYE  180
CESEEGLEAS EGPSKPVPPR TSSSYSSSKR SRAAEVHNLS EKRRRSRINE KMKALQNLIP  240
NSNKTDKASM LDEAIEYLKQ LQLQVQMLSM KNGLVLHPMY LPGVLQPIPL PQVPININEG  300
STSRMSNQLT SSYQPIDLST MANITNSETS FATESSIQAY HGPLLLSTSS KEIYRESILP  360
PQQISTSRSV KNLSAHRHFD AQGLGNNSQL GCMSRSERSE DVLSKDVNDN KIFIQRPHGT  420
DTRIVSNDKG NTKMPNY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6796153e-62AY679615.1 Fragaria x ananassa basic helix-loop-helix protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263501.10.0PREDICTED: transcription factor SPATULA-like isoform X1
TrEMBLA0A1U8ALD80.0A0A1U8ALD8_NELNU; transcription factor SPATULA-like isoform X1
STRINGXP_010263501.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-44bHLH family protein