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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | NNU_011613-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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| Family | bHLH | ||||||||
| Protein Properties | Length: 299aa MW: 32839 Da PI: 7.6226 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 40.6 | 4.5e-13 | 80 | 123 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
Er RR+++++ f++L llP++ K +K++i+ +Av+YIk Lq
NNU_011613-RA 80 TERERRKKMRNMFSNLHALLPHL----PAKADKSTIVDEAVNYIKTLQ 123
6*********************6....39******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 13.668 | 72 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 5.37E-16 | 74 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 2.2E-15 | 76 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 9.61E-11 | 77 | 120 | No hit | No description |
| SMART | SM00353 | 8.0E-10 | 80 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 2.5E-10 | 80 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 299 aa Download sequence Send to blast |
MSEERGDTNF WENSWAFANS DNSGGSEEKS GNKPPQCSNS QSPTATMTVP MGSQKRGRNG 60 ASKNGKGSAG EPDHEIHIWT ERERRKKMRN MFSNLHALLP HLPAKADKST IVDEAVNYIK 120 TLQQSLQKLQ KQRLEMIQGA TIVDFGSSPN VAPPALTLDS RESFLADHGS ASGLAKATTS 180 THSSLLVPRS PSCFQTWSSP NVVLSVYGDE AQISLCSPRK PGLLPTIFYV LEKHKLEVIT 240 AHISSDYYRT MCMIHVQANG TADQFPELHL LPTSGNCMDS GSVQPQLALE LQMLKQRNE |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010263710.1 | 0.0 | PREDICTED: transcription factor bHLH95 | ||||
| TrEMBL | A0A1U8AMP7 | 0.0 | A0A1U8AMP7_NELNU; transcription factor bHLH95 | ||||
| STRING | XP_010263710.1 | 0.0 | (Nelumbo nucifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT1G49770.1 | 2e-37 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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