PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011634-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HSF
Protein Properties Length: 365aa    MW: 40232.2 Da    PI: 8.377
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011634-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.33.9e-36251172103
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d+++++++sw e++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+ll++i
  NNU_011634-RA  25 FLTKTYQLVDDPTTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCEI 111
                    9*****************************************************************99.........******************* PP

                    XXXXXX CS
   HSF_DNA-bind  98 krkkse 103
                    +r+k++
  NNU_011634-RA 112 HRRKTS 117
                    ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5921114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.94E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.4E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPTTDH IVSWGEDETT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTSQPQ  120
VSINHHPHSP IGAAGAIGSP GFFPFPGRVS ISSSDSDEQA NWCESSPLSS PRGGASVYGG  180
GGCVSSSVSA LSEDNERLRR SNSMLMSELA HMKKLYNDII YFVQNHVRPV APSNSYPSSL  240
IICNPSPGTP NQQTSSIANA PSTAIVQKPF HQLLGFYQSS SPKQPSYTKG SFNSSAPSNA  300
SSTILQEPHN NSNNSRTKLF GVPLHSKKRL HPEPTSPPTS MDTSKARLML SNDDLGLNLM  360
PPSPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-222011716123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263520.10.0PREDICTED: heat stress transcription factor B-4-like
SwissprotQ9C6351e-117HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A1U8A9X00.0A0A1U8A9X0_NELNU; heat stress transcription factor B-4-like
STRINGXP_010263520.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-106heat shock transcription factor B4