PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011759-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 606aa    MW: 66470.7 Da    PI: 4.5929
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011759-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.74.7e-1072376062374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + Ll+cA+ v++++ e+a + L  l+e  s++gdp++R+a+yf+eAL +r++       ka ++ +t  ++ s+ ++  k++++++P+ kf+hlt
  NNU_011759-RA 237 LNSLLDCAR-VADSEPERAVKPLIGLRESFSEHGDPTERVAFYFAEALYNRIST------KAGRTASTV-ETCSQDFTLSKTLNDACPYSKFAHLT 324
                    5789****9.7888999************************************9......444433333.34566677889*************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                    aNqaIlea+e+++r+Hi+Df+i +G+QW+aL+qaLa+R+ g+p ++Ri g+ +p+ g    ++l +tg+rL++fA+ l+++fef+  + + +e+le
  NNU_011759-RA 325 ANQAILEATETASRIHIVDFGIVEGVQWAALFQALATRSTGKPsRIRISGIPAPALGksPGDSLVATGNRLREFAKVLDLNFEFES-ILTPIEELE 419
                    ***************************************666659********99999899*************************.799****** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     +++rv+ +E+laVn+vlql++llde+ +  +   + L+l ksl+Pkvv++ e ea +n+ +Fl+rf  al+yy+a+++sle +++r+s +r  vE
  NNU_011759-RA 420 ESSFRVDMDEVLAVNFVLQLYNLLDETPAAVE---RALRLAKSLKPKVVTLGEYEAGLNRVDFLNRFKVALRYYTAVYESLEPGMARDSAQRLLVE 512
                    ************************99999998...9************************************************************ PP

           GRAS 287 rellgreivnvvacegae....rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                    r llgr+i  v+  e+ e    +rer+e++++W++++e +GF++v+ls++a +qak ll +++ s  y++ e+   ++ l W+d pL++vS+Wr
  NNU_011759-RA 513 RLLLGRRIAGVIGPEEGEegsiKRERMEEKGQWKAWMEGCGFQSVALSHYAISQAKILLWNYSySSMYSLMESPPGFLsLLWNDVPLLTVSSWR 606
                    ************87644435559****************************************9999***999777777**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.615210584IPR005202Transcription factor GRAS
PfamPF035141.6E-104237606IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIK QKQQQQKQQL VGVDTFSPLN PWSGTHQTIN NPPSFGYGLG  60
AGFYDSFPVA GTSDTGDTML PFPHLDDPHH STDFRFSDLG GNTGDEFDSD EWMDSLMAGG  120
ESTESSELPS VCDTWHANHD YSLYGGDPFV ACSGRLNVSV PSPSDLNRLV FSDTQKTPKP  180
LQTQALTCAP LPPAPPLPPL PDDSPTATHP PAINRGNDAS GVYAPSPDET ESASQLLNSL  240
LDCARVADSE PERAVKPLIG LRESFSEHGD PTERVAFYFA EALYNRISTK AGRTASTVET  300
CSQDFTLSKT LNDACPYSKF AHLTANQAIL EATETASRIH IVDFGIVEGV QWAALFQALA  360
TRSTGKPSRI RISGIPAPAL GKSPGDSLVA TGNRLREFAK VLDLNFEFES ILTPIEELEE  420
SSFRVDMDEV LAVNFVLQLY NLLDETPAAV ERALRLAKSL KPKVVTLGEY EAGLNRVDFL  480
NRFKVALRYY TAVYESLEPG MARDSAQRLL VERLLLGRRI AGVIGPEEGE EGSIKRERME  540
EKGQWKAWME GCGFQSVALS HYAISQAKIL LWNYSYSSMY SLMESPPGFL SLLWNDVPLL  600
TVSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1392366064375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263679.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A1U8ADU30.0A0A1U8ADU3_NELNU; scarecrow-like protein 4
STRINGXP_010263679.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein