PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_011776-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

LBD

Protein Properties

Length: 306aa MW: 33679.4 Da PI: 7.6307

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_011776-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.3	1.3e-43	8	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrrkC+++Cv+apyfp ++p+kfanvhk+FGasnv k+l++l++++reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++++l NNU_011776-RA 8 PCAACKFLRRKCTQECVFAPYFPPDNPQKFANVHKVFGASNVAKILNDLSTTQREDAVNSLAYEAEARLRDPVYGCVGLISVLQHKLKQVQSDLYN 103 7********************************************************************************************999 PP DUF260 97 lkee 100 +k+e NNU_011776-RA 104 AKKE 107 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.069	7	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.0E-43	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MASSSNSPCA ACKFLRRKCT QECVFAPYFP PDNPQKFANV HKVFGASNVA KILNDLSTTQ 60 REDAVNSLAY EAEARLRDPV YGCVGLISVL QHKLKQVQSD LYNAKKELSN YIGSPAMLPL 120 THQHHHHLYH HQHPSSSMGG PFGMSSIGTS LPPGPSAQAQ FLIREQQQQQ QQMFEAQQVA 180 GVMPMREQQE LMRRYEQQQQ QQQHDLVRYN SGFDVATGAA GAGCAGSSFT EVAPNGVGGG 240 GYNQMSGAMP SSLALVSYDN PFQVQQQPQP EDSQSQQSHT PHLLQRQQQQ HRGGSDECRS 300 ARPSSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-49	5	121	8	129	LOB family transfactor Ramosa2.1
5ly0_B	1e-49	5	121	8	129	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010263734.1	0.0	PREDICTED: LOB domain-containing protein 6-like
Swissprot	Q9FKZ3	2e-68	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A1U8ALZ0	0.0	A0A1U8ALZ0_NELNU; LOB domain-containing protein 6-like
STRING	XP_010263734.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	5e-68	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]