PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011809-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 435aa    MW: 48604.9 Da    PI: 10.0714
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011809-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.73.8e-1715105199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ffkv+     l+s rl +p  f+++ +g++  s t  l+ +  ++W+v l   +++++ +++ GW+ F +++  + gDf+vF++dg+  f  +v++
  NNU_011809-RA  15 FFKVF--LPELNSERLQIPLGFLKHLKGQT--SGTAYLTGPGKNVWRVDL--VRRREGLYFEHGWEVFLSDHSSQFGDFFVFRYDGNLHF--TVQI 102
                    88999..78899999********7778884..559***************..99999***************************997777..9**9 PP

                    E-S CS
             B3  97 frk 99 
                    f++
  NNU_011809-RA 103 FDQ 105
                    997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-2210108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-2211108IPR015300DNA-binding pseudobarrel domain
CDDcd100176.20E-1913104No hitNo description
PROSITE profilePS5086312.02613106IPR003340B3 DNA binding domain
SMARTSM010192.5E-1615106IPR003340B3 DNA binding domain
PfamPF023621.3E-1415105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MAGNKGCCPE RRPHFFKVFL PELNSERLQI PLGFLKHLKG QTSGTAYLTG PGKNVWRVDL  60
VRRREGLYFE HGWEVFLSDH SSQFGDFFVF RYDGNLHFTV QIFDQSGCIK EATFRAKCNQ  120
DQDNKDVVKN NGKKRRQNEE LPPAASSDEV CAVSRKRIKG SSHEVDSVCT MNKRAAEPLN  180
ESVKSALKKK AHKKKDGEDA VKHSLVETLA SPHGSKKQTP CRAGLHYSSS LNDSHKVSKY  240
HQRTVLDACS DEVCAVPRKG IRGSSHEVDS VCTINNRAAE PHDESAKSAL KKKAHRKEDD  300
AVKNSLLESL DGPHGGNKHT PCPVGLHHSV SQNGSHNVRK YYQRTVSPSS KKIHAGSSKG  360
DQIKFLHLNY SNTKKAIRSR ESITTNASGY LVSQRRDVSI EERKRALEAA DAFKTKNPAV  420
VMVMRAYHVC TGFYL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263792.10.0PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X1
RefseqXP_010263794.10.0PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X2
TrEMBLA0A1U8A8U40.0A0A1U8A8U4_NELNU; B3 domain-containing protein Os11g0197600-like isoform X2
TrEMBLA0A1U8AE310.0A0A1U8AE31_NELNU; B3 domain-containing protein Os11g0197600-like isoform X1
STRINGXP_010263792.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.13e-19B3 family protein