PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011811-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 145aa    MW: 16758.4 Da    PI: 10.7261
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011811-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.73.3e-1616106199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ffkvl++   +++  l++p +f+++++g+   sk  +l+ ++g+   vk+++ kk+   ++ +GW +Fvk + L  g+f+vF+++g+s+f   vkv
  NNU_011811-RA  16 FFKVLLRREDFRL--LRIPPSFIKHFNGS--VSKASILRGPTGKPLHVKVKWVKKQ--LFFCNGWGRFVKHHSLALGEFLVFRYHGNSKF--SVKV 103
                    8899977777776..9*******877555..3567899************765554..77889***********************9999..8888 PP

                    E-S CS
             B3  97 frk 99 
                    +++
  NNU_011811-RA 104 YDA 106
                    876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-2110109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-2211109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-1514105No hitNo description
SMARTSM010191.4E-616107IPR003340B3 DNA binding domain
PfamPF023621.0E-1316106IPR003340B3 DNA binding domain
PROSITE profilePS5086311.29329107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MDCTVANSCR RNRPSFFKVL LRREDFRLLR IPPSFIKHFN GSVSKASILR GPTGKPLHVK  60
VKWVKKQLFF CNGWGRFVKH HSLALGEFLV FRYHGNSKFS VKVYDASACE KEVPSLEVGT  120
QGQSHPYQDQ ENQIRLIARD IKKEP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263945.11e-103PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLA0A1U8AB151e-102A0A1U8AB15_NELNU; B3 domain-containing protein Os01g0723500-like
STRINGXP_010263945.11e-103(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.13e-19B3 family protein