PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011812-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 346aa    MW: 39379.7 Da    PI: 10.4972
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011812-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3482.2e-1516106199
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                    ffkvl++   +++  l++p +f++++ g++   +k  +l+ ++g+   vk+++ kk+   ++ +GW +Fvk + L  g+f+vF+++g+s+f   vk
  NNU_011812-RA  16 FFKVLLRREDFRL--LRIPPSFIKHFnGSV---PKASILRGPTGKPLHVKVKWVKKQ--LFFCNGWGRFVKHHSLALGEFLVFRYHGNSKF--SVK 102
                    7888877777766..9*******8775444...446899************765554..77889***********************9999..888 PP

                    EE-S CS
             B3  96 vfrk 99 
                    v+++
  NNU_011812-RA 103 VYDA 106
                    8876 PP
2B351.32.2e-162413191699
                    EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
             B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     ++pk faee+  g   + kt+ + d++gr W v +  ++ +gr+ l++G  +F kan+++egD ++F+l+g ++f  +v++fr+
  NNU_011812-RA 241 KTIPKAFAEENvVGR--KAKTMLVWDPEGRPWPVMV-KKRIDGRVELASGMVQFWKANNIEEGDACIFELKG-NSF--CVQIFRR 319
                    58*********7444..4569***************.4777788*************************988.788..9****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-2010109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-2111109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.11E-1514105No hitNo description
PfamPF023625.9E-1316106IPR003340B3 DNA binding domain
SMARTSM010199.2E-716107IPR003340B3 DNA binding domain
PROSITE profilePS5086311.25129107IPR003340B3 DNA binding domain
SMARTSM010193.2E-6229320IPR003340B3 DNA binding domain
SuperFamilySSF1019361.28E-15239320IPR015300DNA-binding pseudobarrel domain
PfamPF023622.9E-14241319IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-16241320IPR015300DNA-binding pseudobarrel domain
CDDcd100177.82E-16242318No hitNo description
PROSITE profilePS5086311.068243320IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDCTVANSCR RNRPSFFKVL LRREDFRLLR IPPSFIKHFN GSVPKASILR GPTGKPLHVK  60
VKWVKKQLFF CNGWGRFVKH HSLALGEFLV FRYHGNSKFS VKVYDASACE KEVPSLEVGT  120
QGQSHPYQDQ ENQIRLIARD IKKEPVADCY TTEENQGRSS MAKHIKKEEI IADSCPRKET  180
QGKILSKKIK KQLIIGSCPK KENQGKPLAK DIKKETIVSG VEISNGESWT KFHVSDRYLG  240
KTIPKAFAEE NVVGRKAKTM LVWDPEGRPW PVMVKKRIDG RVELASGMVQ FWKANNIEEG  300
DACIFELKGN SFCVQIFRRK GFGEFIIAAK PAVSTRTTVR RIENSI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263946.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLA0A1U8AMH90.0A0A1U8AMH9_NELNU; B3 domain-containing protein Os01g0723500-like
STRINGXP_010263946.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-17B3 family protein