PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_011816-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

G2-like

Protein Properties

Length: 334aa MW: 37269.8 Da PI: 6.9105

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_011816-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.1	7.3e-32	134	187	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ NNU_011816-RA 134 PRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 187 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.68E-16	130	188	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-28	132	188	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.6E-23	134	187	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-7	135	186	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MFSSSHSMRT ALPFPDLSLQ ISPPVIPDCE VKDMSYDGWM KKTLHSDRTS TTDSGSSGSD 60 VTYEQGGFLH FERGYDLRGS EPTLSLGFET AALNPPLMQP PSNLHYLQQP QIYGRDFKRN 120 SRMVNGGKRC VRAPRMRWTT TLHAHFVHAV ELLGGHERAT PKSVLELMNV KDLTLAHVKS 180 HLQMYRTVKS TDKGAGQGQS EMGLIQRSEA VEVEGGISSC ERSDPNPFSY SLNPSPPPPK 240 SPRGSWSSME KNGWSPSAKE SGLMPYPFEP TDLTNEKNQV VGANHFASQN EREKLYLSSL 300 ESSDVRPNLE FTLGRQSWQM DYAEPSNELT LLKC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	135	189	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	135	189	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-16	135	189	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	135	189	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	135	189	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	135	189	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	135	189	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	135	189	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	135	189	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	135	189	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	135	189	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	135	189	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010263804.1	0.0	PREDICTED: probable transcription factor KAN4
TrEMBL	A0A1U8A8V6	0.0	A0A1U8A8V6_NELNU; probable transcription factor KAN4
STRING	XP_010263804.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.1	1e-65	G2-like family protein