PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_011845-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

SRS

Protein Properties

Length: 313aa MW: 33808.5 Da PI: 8.167

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_011845-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	230.2	3.7e-71	95	241	2	153
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 +sg++sCqdCGnqakkdC+h+RCRtCCksrgf+C thvkstWvpa++rrerqq+laa+++++ ++ + +++kr+re+ ++ +l++t+l++++s NNU_011845-RA 95 GSGSMSCQDCGNQAKKDCSHMRCRTCCKSRGFQCPTHVKSTWVPASRRRERQQHLAALQQQQ-QQLRGENPKRQREN--PSAPSLACTRLPTTTSG 187 5799**************************************************997766.55778888999987..77889999999999765 PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 le+ ++P+ev+s+avfrcvrvs+ d++++++aYqtav+igGhvfkGiLydqG+e NNU_011845-RA 188 --LEVGNFPAEVNSPAVFRCVRVSAFDEADDQYAYQTAVNIGGHVFKGILYDQGPE 241 ..89999*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.1E-67	98	241	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.2E-27	100	142	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.7E-27	193	240	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MAGFSLSGGG GGAAAANQRQ QHHQNNEIPP ESLFLYRNEE ISYNKGFELW QQHLHQRQTH 60 QEIYPSSLAV GPSRETNIAD ELSSRAAIVT MRQGGSGSMS CQDCGNQAKK DCSHMRCRTC 120 CKSRGFQCPT HVKSTWVPAS RRRERQQHLA ALQQQQQQLR GENPKRQREN PSAPSLACTR 180 LPTTTSGLEV GNFPAEVNSP AVFRCVRVSA FDEADDQYAY QTAVNIGGHV FKGILYDQGP 240 EGHYVPGESS SGGGGVPLNL ITAGTATTTT TTNVTTTTAA ASAAAALLDP TSLYPTPINA 300 FMAGTQFFPH PRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010263848.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 1 isoform X2
Swissprot	Q9XGX0	9e-95	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A1U8AE77	0.0	A0A1U8AE77_NELNU; protein SHI RELATED SEQUENCE 1 isoform X2
STRING	XP_010263848.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-72	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]