PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011851-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 24177.2 Da    PI: 8.6352
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011851-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.48.9e-29958150
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                   krien++nrqvt+skRr gi+KKA EL vLCdaev++i+fsstgkl ey 
  NNU_011851-RA  9 KRIENSTNRQVTYSKRRGGIFKKAAELTVLCDAEVSLIMFSSTGKLSEYV 58
                   79***********************************************7 PP
2K-box89.27.9e-3071156186
          K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                    yq+ sg +l+++++e++q++l+k k+ ++nL+re+R+++GedL++Ls+ eL+ Leq++e+slk +R++K++++ +q+++ +kke++
  NNU_011851-RA  71 YQQVSGINLWNSHYERMQEHLSKQKEVNNNLRREIRQRMGEDLDDLSVDELRGLEQNMENSLKVVRERKYHVISTQTDTCKKKEER 156
                    7899999*****************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.427161IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-38295IPR002100Transcription factor, MADS-box
CDDcd002651.65E-39280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-283859IPR002100Transcription factor, MADS-box
PfamPF014869.7E-2082155IPR002487Transcription factor, K-box
PROSITE profilePS5129715.14184193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGRGKIEIKR IENSTNRQVT YSKRRGGIFK KAAELTVLCD AEVSLIMFSS TGKLSEYVSH  60
TATTKKIFDR YQQVSGINLW NSHYERMQEH LSKQKEVNNN LRREIRQRMG EDLDDLSVDE  120
LRGLEQNMEN SLKVVRERKY HVISTQTDTC KKKEERDEIP HFGFVDNGGD YESALGLANN  180
GSHLFAFRLQ PNQPNLQDGG IYGSYDLRLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-17159159MEF2C
5f28_B1e-17159159MEF2C
5f28_C1e-17159159MEF2C
5f28_D1e-17159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0486440.0GU048644.1 Nelumbo nucifera voucher FLAS:Yoo & Koh 1002 AP3-1 (AP3-1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263856.11e-152PREDICTED: floral homeotic protein DEFICIENS isoform X1
SwissprotQ003J21e-102TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A1U8AAR21e-151A0A1U8AAR2_NELNU; floral homeotic protein DEFICIENS isoform X1
STRINGXP_010263856.11e-152(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.17e-77MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]