PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011892-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family BBR-BPC
Protein Properties Length: 329aa    MW: 36396.4 Da    PI: 10.021
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011892-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind386.44.3e-11813291301
      GAGA_bind   1 mdddgsre..rnkgyye...paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensl 91 
                    mdd ++re  r+k +y+   ++  + +++ +q+m+++aerda+i+ern+al+ekkaa+aerdmaflqrd+a+aern+al+erdn+++al+++en+l
  NNU_011892-RA   1 MDDGSQREngRHKDQYKtvhSQWMIPQHQMKQVMALMAERDAAIQERNVALAEKKAALAERDMAFLQRDAAIAERNNALMERDNAIAALEYRENAL 96 
                    8999998889****99965433566788999****************************************************************9 PP

      GAGA_bind  92 a....salpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqr..akkpkekkak...kkkkksekskkkv 178
                    +     ++p+g++v +gtk++++l +     l++ ++++r+++++ea+p+++a+ ea++ ++ k++++  +++p+++ ++   k kk +e+ +k v
  NNU_011892-RA  97 SgsgvPTCPPGCGVPRGTKHVHHLTH-----LTEAPYHARDMHITEAYPLSSAPAEAHKPRRAKRTKKesKAVPLKRSQQpssKGKKGGEDLNKLV 187
                    9988889***************9888.....99*******************99999988777644430033444444433334444444444444 PP

      GAGA_bind 179 kkesader.......................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrr 251
                    + +    +                       sk ++k +dl+ln+v++Dest+PvPvCsCtG+l+qCYkWGnGGWqSaCCttt+S yPLPv++++r
  NNU_011892-RA 188 TVA----KlhdwrsgqdangsgedlkkqlavSKPDWKGQDLGLNQVNFDESTMPVPVCSCTGVLQQCYKWGNGGWQSACCTTTLSSYPLPVMPNKR 279
                    444....1445679********************************************************************************** PP

      GAGA_bind 252 gaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                    +aRi+grKmS++af+klL++Laa+G+dls+pvDLkdhWAkHGtn++vti+
  NNU_011892-RA 280 HARIGGRKMSGSAFTKLLSRLAAQGHDLSTPVDLKDHWAKHGTNRYVTIK 329
                    *************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.0E-1621329IPR010409GAGA-binding transcriptional activator
PfamPF062171.1E-1021329IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDDGSQRENG RHKDQYKTVH SQWMIPQHQM KQVMALMAER DAAIQERNVA LAEKKAALAE  60
RDMAFLQRDA AIAERNNALM ERDNAIAALE YRENALSGSG VPTCPPGCGV PRGTKHVHHL  120
THLTEAPYHA RDMHITEAYP LSSAPAEAHK PRRAKRTKKE SKAVPLKRSQ QPSSKGKKGG  180
EDLNKLVTVA KLHDWRSGQD ANGSGEDLKK QLAVSKPDWK GQDLGLNQVN FDESTMPVPV  240
CSCTGVLQQC YKWGNGGWQS ACCTTTLSSY PLPVMPNKRH ARIGGRKMSG SAFTKLLSRL  300
AAQGHDLSTP VDLKDHWAKH GTNRYVTIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263912.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010263913.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010263915.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010263916.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010263917.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010263918.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010263919.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010263920.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010263921.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010263922.10.0PREDICTED: protein BASIC PENTACYSTEINE6
RefseqXP_010263924.10.0PREDICTED: protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-133BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A1U8AMF60.0A0A1U8AMF6_NELNU; protein BASIC PENTACYSTEINE6
STRINGXP_010263912.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-120basic pentacysteine 6