PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011896-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 693aa    MW: 77020.7 Da    PI: 7.1718
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011896-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.9e-0796120526
                    --SGGGGTS...--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartG...tCkyGdrCkFaHg 26 
                    +C+  a+tG    C++G++C+F+H+
  NNU_011896-RA  96 ICPEVAKTGnvsSCRFGGNCRFSHD 120
                    5999********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.1391121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.76596122IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-596120IPR000571Zinc finger, CCCH-type
SMARTSM003565.4132159IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.648135160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.701.0E-70337580IPR013785Aldolase-type TIM barrel
SuperFamilySSF513954.61E-61341654No hitNo description
CDDcd028011.76E-89341576No hitNo description
PfamPF012071.1E-49344611IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360425443IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MEEAPGEVET KVSEEAPSSN GSEVHLKPEE LVAKAIAPVK REFLRPPPLR PCSNDAVNGE  60
PVVNKKVVPS NVVTGKKSRR QLKRERQQER KSASHICPEV AKTGNVSSCR FGGNCRFSHD  120
VEAFKAQKPA DLDGDCPFSA LEGPCPYGLA CRFSSTHKDG FPADSLNAQK KSSEINGLSK  180
DLQKLLWKNK VNFPMADAQL KLLGLLGNGN AKKKNLEPHK EEGDQAVLNG SHIGENNDGE  240
IAYDSVEKVD CPQRAKEVED HVGDSIALDL RPSKKAKTPL IEKCCSSEVE SSGLNLQEKE  300
FERSLIQAEL ETTPSDNCLA ETDMCLKAHP REKKLIDFRG KLYLAPLTTV GNLPFRRVCK  360
MLGADITCGE MAMCTNLLQG QASEWALLRR HSSEDLFGVQ ICGAYPDTVA RTVELINREC  420
TVDFIDINMG CPIDIVVNKG AGSALLTKPL RMKNVIQATS GTVDKPITVK VRTGYFEGRN  480
RIDSLIADIG NWGAAAITIH GRSRQQRYSK LADWDYIYQC ARKAPDVLHV LGNGDVFSYL  540
DWNKHISDCA ELSTCIVARG SLIKPWIFTE IKEQRHWDIS SGERLDILRD FIHFGLEHWG  600
SDTKGVETTR HFLLEWLSYT CRYIPVGLLD IIPQRLNWRP PSYFGRNDLE TLMASDSAAD  660
WIRISEMLLG KVPSGFTFAP KHKSNAYDRA ENG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A6e-2833858527266tRNA-dihydrouridine synthase B
6ei9_B6e-2833858527266tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263932.10.0PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
SwissprotQ7XT070.0DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLA0A1U8A9690.0A0A1U8A969_NELNU; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGXP_010263932.10.0(Nelumbo nucifera)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]