PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011942-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 211aa    MW: 23618 Da    PI: 10.0201
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011942-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.4e-17128162135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  NNU_011942-RA 128 CLHCLAEKTPQWRAGPLGPKTLCNACGVRYKSGRL 162
                    99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.23E-14120183No hitNo description
PROSITE profilePS5011411.78122158IPR000679Zinc finger, GATA-type
SMARTSM004012.6E-14122176IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.6E-14125160IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.76E-10127175No hitNo description
PROSITE patternPS003440128153IPR000679Zinc finger, GATA-type
PfamPF003203.3E-15128162IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MLLVPPIQEL LEEDLEWLSN EDAFPAVEAF DDFLLGKLSK GPKQQSPVSV LENSSNSAIN  60
SSSSIMSCCG NLQVPVRARS KRRRRRRSGF SDISGQQWWW WWEPKNKSIG GGGAAKVTKT  120
TASMGRRCLH CLAEKTPQWR AGPLGPKTLC NACGVRYKSG RLVPEYRPAC SPTFSSELHS  180
NSHRKILEMR RQKQKELLLK SMDKGDDGNE A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17886RSKRRRRRR
28085KRRRRR
38086KRRRRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264014.11e-144PREDICTED: GATA transcription factor 1
SwissprotQ8LAU99e-50GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A1U8AEN81e-142A0A1U8AEN8_NELNU; GATA transcription factor 1
STRINGXP_010264014.11e-143(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-46GATA transcription factor 1