PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012072-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family YABBY
Protein Properties Length: 246aa    MW: 27193.3 Da    PI: 8.5024
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012072-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY127.22.2e-396221023170
          YABBY  23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirP 118
                    +vsvP +slfk+vtvrCGhCt+llsvn++      a + hl++++  + ++ l+   +      + + +++ s+ s    +  ++e+pr+p v+r 
  NNU_012072-RA  62 MVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLGNTFFSPSHNFLEEIPSPQPNLLIDQPNPNDSIVS---VRGGSDELPRPPAVNRQ 154
                    69***********************999999999999999999999998877777777766666766666666665...34678899**999**99 PP

          YABBY 119 PekrqrvPsaynrfi....keeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                              y+  i    ++eiqrika+nPdi+hreafsaaaknWahfP+ihfgl
  NNU_012072-RA 155 TVESETLKQIYDLDIyiccRDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 210
                    99888888888753322558**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.1E-3862210IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
NQSKPLNPII QSNQGIKDVL LLCFFTGPPL SLRAALLRPL QLLRHCPRGI KLSISSLTRG  60
TMVSVPCSSL FKTVTVRCGH CTNLLSVNMR GLLLPAANQL HLGNTFFSPS HNFLEEIPSP  120
QPNLLIDQPN PNDSIVSVRG GSDELPRPPA VNRQTVESET LKQIYDLDIY ICCRDEIQRI  180
KAGNPDITHR EAFSAAAKNW AHFPHIHFGL MPDQTVKKSN VRQQEGEEVL MKDGIFASAN  240
VGVSPY
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264212.11e-115PREDICTED: protein YABBY 4-like
SwissprotQ01JG24e-56YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF04e-56YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A1U8AF421e-114A0A1U8AF42_NELNU; protein YABBY 4-like
STRINGXP_010264212.11e-115(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.18e-58YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]