PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_012101-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

GRAS

Protein Properties

Length: 783aa MW: 84714.7 Da PI: 6.2332

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_012101-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	341.8	1.1e-104	421	782	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 l+++L+++Ae v++g+ a+ +Larl+++ sp g+p+qR+a+yf+eAL+ l++ +++++ + pp+++++ +++ ++ a+k+fse+sP+l+f+++ NNU_012101-RA 421 LIDQLFKAAELVEAGNSVHARGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLS-SNNMATSPPPRNSTHFDVVLKIGAYKAFSEISPLLQFANF 515 5789************************************************9.88888899999999999******************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..e 190 t+Nqa+l+ + g +r+Hi Dfdi+ G+QW +++q+LasR g+psl+iT+++s++s+++ el t+e+L++fA+ lg+ fe +++ ++++ + NNU_012101-RA 516 TCNQALLDVLLGFDRIHIMDFDIGIGAQWSSFMQELASR--GAPSLKITAFASQASHDALELVLTRENLTHFANDLGIAFELDIVNLDSFDPAswS 609 **********************************9..99********9************************988877654348 PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 l +L+v ++Ea+aVnl + + + + s++ ++L++vk+lsPk+vv v++ +d+++ +F ++fl+al+ +s+l+dsl+a +s++ +k+E NNU_012101-RA 610 LAQLHVAENEAVAVNLPVGSSSAH--PSSVP----SLLRFVKQLSPKIVVSVDRGCDRSDLPFSHHFLHALQSFSVLLDSLDAV-NVNSDAVHKIE 698 99************877776..55555....5*****************************************665.5799*** PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ll+++i+++v ++++ e++ Wr+ + +aGF+p+p++++a++qa++l+++ +++g++ve++++sl+l+W++r+Lvs+SaW+ NNU_012101-RA 699 KFLLQPRIESIVLGRQRA----PEKMPPWRNLFASAGFSPLPFTNFAETQAEYLVKRLQVRGFHVEKRQASLILYWQRRELVSASAWK 782 *********99998....***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	49.296	395	762	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.0E-102	421	782	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 783 aa Download sequence Send to blast
MRGMPFNLQG KGVLEVAEIS PISGGKWKDS SCLGSEPTSV LDTRRSPSPP TSTSTLSSSL 60 GGGGSTDTAG VAAVSDNPTQ KWPPTQQQED SSAAVAEPGS CVGGGGGSRK DEWASELQPI 120 PTALEIVNGG ATGVEKCVLG MEDWESMLSE SASSPSQEQS LLRWIMGDVD DPSSGLKHLL 180 QGGGSSEFEG NAGGFGIVDQ GFALESVGGG ASVSGNVMGT INPSLAFPGS ICAPNNLNGR 240 AGSVPNTSAL PNYKVPCFGL NNNSNPPNPI NLPLPISFPP GMFFQQSQQQ QPQLEPADEK 300 PQLFNPPQVP INQQQAHHPQ NPTFFMPLPY TQQEQHLLPP QPKRYHATVD PSCQIPKVPF 360 SDSGQELFLR RQQQQQQQGF PPQLQLLSPH LPQRPTTMAT KPKVVGAGDE VAHQHQQQQA 420 LIDQLFKAAE LVEAGNSVHA RGILARLNHQ LSPVGKPLQR AAFYFKEALQ LLLLSSNNMA 480 TSPPPRNSTH FDVVLKIGAY KAFSEISPLL QFANFTCNQA LLDVLLGFDR IHIMDFDIGI 540 GAQWSSFMQE LASRGAPSLK ITAFASQASH DALELVLTRE NLTHFANDLG IAFELDIVNL 600 DSFDPASWSL AQLHVAENEA VAVNLPVGSS SAHPSSVPSL LRFVKQLSPK IVVSVDRGCD 660 RSDLPFSHHF LHALQSFSVL LDSLDAVNVN SDAVHKIEKF LLQPRIESIV LGRQRAPEKM 720 PPWRNLFASA GFSPLPFTNF AETQAEYLVK RLQVRGFHVE KRQASLILYW QRRELVSASA 780 WKC

Sequence ? help Back to Top

Protein Sequence Length: 783 aa Download sequence Send to blast

MRGMPFNLQG KGVLEVAEIS PISGGKWKDS SCLGSEPTSV LDTRRSPSPP TSTSTLSSSL  60
GGGGSTDTAG VAAVSDNPTQ KWPPTQQQED SSAAVAEPGS CVGGGGGSRK DEWASELQPI  120
PTALEIVNGG ATGVEKCVLG MEDWESMLSE SASSPSQEQS LLRWIMGDVD DPSSGLKHLL  180
QGGGSSEFEG NAGGFGIVDQ GFALESVGGG ASVSGNVMGT INPSLAFPGS ICAPNNLNGR  240
AGSVPNTSAL PNYKVPCFGL NNNSNPPNPI NLPLPISFPP GMFFQQSQQQ QPQLEPADEK  300
PQLFNPPQVP INQQQAHHPQ NPTFFMPLPY TQQEQHLLPP QPKRYHATVD PSCQIPKVPF  360
SDSGQELFLR RQQQQQQQGF PPQLQLLSPH LPQRPTTMAT KPKVVGAGDE VAHQHQQQQA  420
LIDQLFKAAE LVEAGNSVHA RGILARLNHQ LSPVGKPLQR AAFYFKEALQ LLLLSSNNMA  480
TSPPPRNSTH FDVVLKIGAY KAFSEISPLL QFANFTCNQA LLDVLLGFDR IHIMDFDIGI  540
GAQWSSFMQE LASRGAPSLK ITAFASQASH DALELVLTRE NLTHFANDLG IAFELDIVNL  600
DSFDPASWSL AQLHVAENEA VAVNLPVGSS SAHPSSVPSL LRFVKQLSPK IVVSVDRGCD  660
RSDLPFSHHF LHALQSFSVL LDSLDAVNVN SDAVHKIEKF LLQPRIESIV LGRQRAPEKM  720
PPWRNLFASA GFSPLPFTNF AETQAEYLVK RLQVRGFHVE KRQASLILYW QRRELVSASA  780
WKC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	9e-37	406	781	1	377	Protein SCARECROW
5b3h_D	9e-37	406	781	1	377	Protein SCARECROW
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM660717	4e-38	KM660717.1 Buxus sempervirens clone VV_contig_1686 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019054166.1	0.0	PREDICTED: scarecrow-like protein 22
TrEMBL	A0A1U8Q7Z6	0.0	A0A1U8Q7Z6_NELNU; scarecrow-like protein 22
STRING	XP_010264405.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-117	GRAS family protein