PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012131-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 358aa    MW: 39899.7 Da    PI: 4.9649
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012131-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044229251123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C+k+F++   L  H  +H
  NNU_012131-RA 229 YQCGTCKKVFRSYQALGGHRASH 251
                    9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.32E-7326No hitNo description
PROSITE profilePS5015710.367431IPR007087Zinc finger, C2H2
SMARTSM003550.16426IPR015880Zinc finger, C2H2-like
PfamPF139126.4E-6428IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576673.32E-7224251No hitNo description
PfamPF139125.6E-11228253IPR007087Zinc finger, C2H2
SMARTSM003550.098229251IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.806229256IPR007087Zinc finger, C2H2
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
PROSITE profilePS501579.12287314IPR007087Zinc finger, C2H2
SMARTSM003550.44287309IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-11287311IPR007087Zinc finger, C2H2
PROSITE patternPS000280289309IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MERHSCKLCF KRFANGRALG GHMRSHMATL PPQPKTQPTH PIGDETESAS SSSPSSSSSS  60
SGEEVEEEEE EEEEEEKALY YGLRENPKKS FRLVDPEFSF AVDAGSVVQD RESETESSRN  120
PSRRRSKRNR KSSIAEQQQQ QHQQQQQEEV KKPKLSKSSK AESTAEPEPV SSVSDTTPEE  180
DVALCLMMLS RDIWMREEEE EEEEEAERSI EESDNSEELK FPTRTRGRYQ CGTCKKVFRS  240
YQALGGHRAS HKKIKGCTPS SSPASRTHEL ESELGNAGTS VVDRRIHECP VCFRVFGSGQ  300
ALGGHKRSHL SASATAANST KFGDNLIDLN LPAPLEDDDM SQVELSAVSD AEFVDQIK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264306.10.0PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A1U8AP180.0A0A1U8AP18_NELNU; zinc finger protein ZAT1-like
STRINGXP_010264306.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.16e-48C2H2-like zinc finger protein