PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012132-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 493aa    MW: 53657.8 Da    PI: 6.7238
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012132-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002884100319
                    ETTTTEEESSHHHHHHH CS
        zf-C2H2   3 CpdCgksFsrksnLkrH 19 
                    C++Cgk Fs++ ++  H
  NNU_012132-RA  84 CENCGKEFSSWKSFLEH 100
                    **************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.00381335IPR007087Zinc finger, C2H2
PROSITE profilePS501578.5171335IPR007087Zinc finger, C2H2
SMARTSM003555.31335IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.46E-51335No hitNo description
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
SuperFamilySSF576678.46E-577101No hitNo description
SMARTSM0035520082102IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.86E-8223246No hitNo description
PROSITE profilePS5015710.076224251IPR007087Zinc finger, C2H2
PfamPF139121.7E-9224248IPR007087Zinc finger, C2H2
SMARTSM003550.13224246IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280226246IPR007087Zinc finger, C2H2
SuperFamilySSF576674.86E-8307334No hitNo description
PROSITE profilePS501579.369312334IPR007087Zinc finger, C2H2
PfamPF139121.8E-12312335IPR007087Zinc finger, C2H2
SMARTSM003550.44312334IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280314334IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MAMVVDQQTS FKHYCRICKK GFGCGRALGG HMRAHGIGDE AGQIEDEDPV SDWEDKLGGN  60
SPPGNKRMYA LRTNPNRLKS CRICENCGKE FSSWKSFLEH GKCNCDDDME SPVSSPLPGS  120
DDEDGAGRRS CGWYKRKRSI RAKVGNSNSN CPSSEEEDLA NCLVMLSTAR VDVDPLVADA  180
EESCASASKE EERRNPVGVV PLQLPIAHRL SSEKAKGVPA GGMFECKACK KVFNSHQALG  240
GHRASHKKVK GCFAAKMDDL DDSLAEEDVI THDGYGNPTK SSINATLPFE QVSQLPPLAA  300
IPSTSKRKSK LHECSICHRV FSSGQALGGH KRCHWVTSNS PADTSSIAKF HQFHHQTQQL  360
HQRPTKFNKS EPLDLNLPAP VDDIAGILQD PQNPLGLEVP TAIFLQTWIG LDTNCNTHSD  420
KHHNHHPSLS NDDNNNNTTT TNANTSVQNV DDEADSKVKL AKLSELKDMN MGGESSPWLQ  480
VGIGSICNGG SDP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264307.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A1U8AFB00.0A0A1U8AFB0_NELNU; zinc finger protein ZAT4-like
STRINGXP_010264307.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-23C2H2-like zinc finger protein