PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012138-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 456aa    MW: 49883.3 Da    PI: 7.1028
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012138-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.4e-16282327555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    hne Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  NNU_012138-RA 282 HNESERKRRDKINQKLKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 327
                    *************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-19274337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.089277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-18281335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.27E-18282331No hitNo description
PfamPF000105.6E-14282327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-19283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MNQCVPRCDL DETPTPAGLT THPHSNSDSA ATDVSMLNTE VVELTWENGQ VALHGLGPNR  60
PIGKPLPSTT TTTSKYTWEK PRAGGTLESI VSQATRLDPS KVPLTGGDDL VPWFYPHGTI  120
AAQPITMDAL VPCANRTTST DDQSNHVPEP NSLRPESSGE AGTVERRTKE VALTKKLARK  180
ALVPVTHERS SKQSVSISAT FGRDSSRHDM SLIDTYELDP DTGFTSNSLG SPENTSTGKP  240
SGSYNKPTTV DDHDSREPTG LDEDNKKKSF TSSKRSRAAE IHNESERKRR DKINQKLKTL  300
QKLVPNSSKT DKASMLDEVI EYLKQLQAQV QMMSRMSMPH MMLPMAMQQQ FQMSMLAQMG  360
MTMGMNMGMG MMDINSIARP NITGIPPVVP SGVFMPLSSW DNNSADRLPS SCSIMPDPLT  420
TFLSCQSKPI TMDSYSSRMA ALYQQLHQSA ASNSKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285290ERKRRD
2286291RKRRDK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264312.10.0PREDICTED: transcription factor UNE10-like
TrEMBLA0A1U8AFB50.0A0A1U8AFB5_NELNU; transcription factor UNE10-like
STRINGXP_010264312.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-71bHLH family protein