PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012147-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family SBP
Protein Properties Length: 403aa    MW: 44034.9 Da    PI: 8.0332
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012147-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.27.3e-41169246178
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                    +CqvegC++ l +ak+yhrrhkvCe+hskap+v+v g+eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++
  NNU_012147-RA 169 RCQVEGCHVALLNAKDYHRRHKVCEMHSKAPKVVVLGIEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSN 246
                    6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.2E-35166231IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.325167244IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.18E-38168249IPR004333Transcription factor, SBP-box
PfamPF031106.2E-32170243IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MENGGNGLFS GNGGSGRGQN SNNVNHSWDI WELGTSRFDW SNNSFNADAV TTTTTTAVAA  60
AAAAAHAIMF PHQGDNAHHH HHLHHYPSLY ATAASHVHPD PHLACLKLGK RHYFEDGTPL  120
GERHVPGFPI EKRGRSYDVG VGVGGPSSST TAAATIAAAG MGSPVAVPRC QVEGCHVALL  180
NAKDYHRRHK VCEMHSKAPK VVVLGIEQRF CQQCSRFHVV SEFDDSKRSC RRRLAGHNER  240
RRKSSNDSIS RNQSQEQKST GGRFSCISSS SGRALSLLSS KSSSWISPSD LSSRSSAALR  300
ELIAENRAAA LARQLFLDRA WHHHAMDELG GTQPGIVPHP HQHQPFPEST EWNKFQDGDA  360
HVTLDLMQMP SSPFGFLPGK TKSKEEEDEC CEIWKSLEGT HVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-291702431184squamosa promoter binding protein-like 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264332.10.0PREDICTED: squamosa promoter-binding-like protein 7
TrEMBLA0A1U8ANF50.0A0A1U8ANF5_NELNU; squamosa promoter-binding-like protein 7
STRINGXP_010264332.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.41e-35squamosa promoter binding protein-like 10