PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_012148-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

SBP

Protein Properties

Length: 330aa MW: 37049.6 Da PI: 7.8415

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_012148-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.7	2.5e-41	152	229	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adl++ak+yhrrhkvCe+hska++vl+ gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+ NNU_012148-RA 152 RCQAEGCNADLTHAKHYHRRHKVCEFHSKASTVLAGGLTQRFCQQCSRFHLLSEFDQGKRSCRKRLADHNRRRRKSQP 229 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	8.4E-35	147	214	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.53	150	227	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.12E-38	151	231	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.4E-30	153	226	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MLEYEWGNPS AMLLSGEEPG QDSDQTRQIF DQYNQTLAGN FLSPAASYPT HHPFQQQQHQ 60 NQTHLQSLYD ARSYSLSYPH QHPAPEPVAG PTSFMILPKS EEVCGPGGMD FPARIGLNLG 120 GRTYFSSAED DFVNRLYRRS RPIEAGVSNS PRCQAEGCNA DLTHAKHYHR RHKVCEFHSK 180 ASTVLAGGLT QRFCQQCSRF HLLSEFDQGK RSCRKRLADH NRRRRKSQPQ QQTQQQQQQV 240 QLENALGSPS ENPARSSPES GAHSSSSVTV AVSPPRMSLG CFQPRNHDSK SSSSSSTSLF 300 SQVGNFRLYE RQIQSSSWDE EDEQYGGREG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-30	145	226	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269\|PubMed:12671094, ECO:0000269\|PubMed:16095614, ECO:0000269\|PubMed:17093870}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010264333.1	0.0	PREDICTED: squamosa promoter-binding-like protein 8
Swissprot	Q8GXL3	7e-79	SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBL	A0A1U8AP32	0.0	A0A1U8AP32_NELNU; squamosa promoter-binding-like protein 8
STRING	XP_010264333.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	8e-77	squamosa promoter binding protein-like 8

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xing S, et al. SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. Plants (Basel), 2013. 2(3): p. 416-28 [PMID:27137384]