PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012184-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 282aa    MW: 31059.4 Da    PI: 5.0861
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012184-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.8e-1896145255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  NNU_012184-RA  96 TYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALTIKG 145
                    69****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-2196154IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-3196154IPR001471AP2/ERF domain
SMARTSM003802.9E-3696159IPR001471AP2/ERF domain
PROSITE profilePS5103223.1396153IPR001471AP2/ERF domain
PfamPF008472.3E-1296145IPR001471AP2/ERF domain
CDDcd000186.14E-3297155No hitNo description
PRINTSPR003673.2E-1097108IPR001471AP2/ERF domain
PRINTSPR003673.2E-10119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEEGIILDCE AARASSPSSS TTSYTSITTS SSSFSSTTFL GRPNSSAELD TTQKISTEIT  60
SQQGLKEVVV QEVKDENESR KRQKASSNVN DGKHPTYRGV RMRNWGKWVS EIREPRKKSR  120
IWLGTFPTPE MAARAHDVAA LTIKGNSAYL NFPELAHELP RPASSSPKDI QAAAAKAAAA  180
TFDKQATGRE VETEAQSKRS KPGFPISDYS PIHTTTSDDT PEFSISPSTD EETLFDLPDL  240
FLDHTISPNR FDFSLSLLSP GADLGLRMDE PLLLWEYHTE VL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-17941531272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264388.10.0PREDICTED: ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ72e-55ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1U8ANK00.0A0A1U8ANK0_NELNU; ethylene-responsive transcription factor ERF039
STRINGXP_010264388.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.18e-54ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]