PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_012287-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

G2-like

Protein Properties

Length: 164aa MW: 18319.8 Da PI: 6.2758

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_012287-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.9	8.2e-32	95	148	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+ave+LGG+ekAtPk +l+lm++kgL+++hvkSHLQ YR+ NNU_012287-RA 95 PRLRWTPELHLCFVQAVERLGGQEKATPKLVLQLMNIKGLSIAHVKSHLQIYRS 148 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.5E-30	91	150	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.181	91	151	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-15	93	150	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.4E-23	95	148	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-9	96	146	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MLKAFGLQLD KTNSAQYAPK LELGVKLGMM LEKGCESCGD DLEAKPSEKN EDEEGDDEST 60 PRTSVSSSNC SVEESEMKAS SGGGKVRQYI RSKMPRLRWT PELHLCFVQA VERLGGQEKA 120 TPKLVLQLMN IKGLSIAHVK SHLQIYRSSE EQTWELDSYP LRGR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-20	96	149	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-20	96	149	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-20	96	149	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-20	96	149	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-20	96	149	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-20	96	149	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-20	96	149	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-20	96	149	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-20	96	149	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-20	96	149	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-20	96	149	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-20	96	149	4	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010264567.1	1e-80	PREDICTED: uncharacterized protein LOC104602538 isoform X1
TrEMBL	A0A1U8ANZ2	3e-79	A0A1U8ANZ2_NELNU; uncharacterized protein LOC104602538 isoform X1
STRING	XP_010264567.1	5e-80	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	1e-35	G2-like family protein