PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_012290-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

LBD

Protein Properties

Length: 192aa MW: 21306.5 Da PI: 9.9182

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_012290-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.9	4.6e-40	34	133	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk l+r+C+++C++apyf a++++kfa vhk+FGasnv+k+l+++pee+red+++sl+yeAe+r+rdPvyG++g i lq q+ ql+++la NNU_012290-RA 34 SCAACKSLKRRCSPNCIFAPYFRAHEARKFARVHKVFGASNVSKILAEVPEEHREDTVNSLAYEAEVRLRDPVYGCIGAIALLQAQMLQLQHDLAI 129 6**********************************************************************************************9 PP DUF260 97 lkee 100 ++++ NNU_012290-RA 130 VRAR 133 9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.878	33	134	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.8E-39	34	131	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MAKGKQSSVN GRKNLTVRKE MMMKGGQECR SSSSCAACKS LKRRCSPNCI FAPYFRAHEA 60 RKFARVHKVF GASNVSKILA EVPEEHREDT VNSLAYEAEV RLRDPVYGCI GAIALLQAQM 120 LQLQHDLAIV RARLARYNAA TSRAVPVPLL PAAALPGFPI SDAMRSQTLL QGHRSLCTQE 180 YQQQNEKGDD FQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-42	31	149	8	126	LOB family transfactor Ramosa2.1
5ly0_B	2e-42	31	149	8	126	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010264570.1	1e-142	PREDICTED: LOB domain-containing protein 21
Swissprot	Q9SRL8	3e-59	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A1U8AAT7	1e-140	A0A1U8AAT7_NELNU; LOB domain-containing protein 21
STRING	XP_010264570.1	1e-141	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	3e-37	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]