PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012342-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 705aa    MW: 75798.2 Da    PI: 5.9144
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012342-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.8e-07278298526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C+ f++ GtC+ Gd+C +aHg
  NNU_012342-RA 278 PCPEFRK-GTCRQGDTCEYAHG 298
                    8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.4E-1332154IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.15E-1335151IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.2276151IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0976106IPR002110Ankyrin repeat
PfamPF136372.4E-777135No hitNo description
CDDcd002045.90E-1278173No hitNo description
SMARTSM002480.32111143IPR002110Ankyrin repeat
PROSITE profilePS5008811.274111146IPR002110Ankyrin repeat
Gene3DG3DSA:4.10.1000.102.3E-4270300IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-6273299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.953273300IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-5278298IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-4306336IPR000571Zinc finger, CCCH-type
SMARTSM0035637308331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MCSGPKRKLS PADFVMEGEF QKPKEGVNCN LSVLLELAAS DDLISFRSLV EGEGLDIDES  60
SSWYGRAIGS KKMGFVERTP LMIAALFGST EVLTYILSTG KVDVNRACGS DGATALHCSA  120
AGGSASSIGI VKLLLDASSD ANSVDANGNR PGDLVPPVLK SCNSRKKTLE MMLNGCSCTG  180
EGRISPDLTM NQTEEQPEQL LMPQASKDSS EKKEYPFDPS LPDIKNGIYG TDEFRMYTFK  240
VKPCSRAYSH DWTECPFVHP GENARRRDPR KYNYSCVPCP EFRKGTCRQG DTCEYAHGVF  300
ECWLHPAQYR TRLCKDETRC TRRVCFFAHK PEELRPLYAS TGSAVPSPRS SSANISSLDM  360
APMSPVALGS SSLLMLSTST PPMSPSVAPS SPIGGALWQN QPGLAPPTLQ LPGSRLKTTL  420
SARDMDLDME LLGLDRHHQQ QQLMDEISNL STQSSWTLAT AAALAASSGG RTGEYSQLGG  480
VMPTNLDDVF GSVDTSVLSQ LQGLSLSAAA SQLQSPTGFH IRESINQKLL PSYSTSLSSS  540
PARTSTSFGL DPSGSAAAAV MNLRSTAFSK RSRSFIDRSP VNRLSGLPSI ATSATATSST  600
LSDWGSPDGK LDWGIRGEEL NKLRKSASFG FRSSNGNMGP ANSPMTANVD EPDVSWVQSL  660
VKDVPSVGTG QFAAGPQQYQ LNSGVSEMVA PWVEQFYMEQ EQMVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264619.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like isoform X1
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A1U8APR30.0A0A1U8APR3_NELNU; zinc finger CCCH domain-containing protein 66-like isoform X1
STRINGXP_010264619.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein