PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012406-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 549aa    MW: 59502.9 Da    PI: 9.6886
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012406-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-056688123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  nL+ H r H
  NNU_012406-RA 66 FVCEICNKGFQRDQNLQLHRRGH 88
                   89*******************88 PP
2zf-C2H213.80.00017142164123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k +  +s+ k H +t+
  NNU_012406-RA 142 WKCEKCSKKYAVQSDWKAHTKTC 164
                    58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.21E-76588No hitNo description
SMARTSM003550.0176688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9496688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355100107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.21E-7137162No hitNo description
SMARTSM00355130142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010075Biological Processregulation of meristem growth
GO:0045604Biological Processregulation of epidermal cell differentiation
GO:0048364Biological Processroot development
GO:0051302Biological Processregulation of cell division
GO:0003676Molecular Functionnucleic acid binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MQMMSGDGLS IPSAIRGFPQ PPIPNPNPNP NGTTVVKKKR NLPGTPDPDA EVIALSPKTL  60
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSK EIRKRVYICP EKTCVHHDPS  120
RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH TKTCGTREYK CDCGTLFSRK  180
DSFITHRAFC DALAEESARL TSVAATNLNF RTESINNATS TLPHGFGSRG GPDAIAGIPS  240
LCPIFRPEFA GPEAANSLDA NRQKPRLSLW LDRANSHMNP IDMAANNSNA FLTSSSTAGL  300
PEFVQMASTN LFNSSTSLVD YGGCVQPQWL DRCSGASTGA NLSLSTSPRG LKEENGNKGQ  360
LVESLASLYS NSQNQQANSA HMSATALLQK AAQMGSTRSN PSLLSSFGVG NSSSSDTTSF  420
NPHTQTRNDF HQLLRQAKQP ENLNELMNSI STATATTGVG GGMMGGLNLS SLTDTASNLD  480
RLMIAHSGKQ GQPFPLKLHP TANEVEQSLT RDFLGVGGDS GRPFLQHELA AKFASIGSAM  540
NLSQYNGTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-38138207372Zinc finger protein JACKDAW
5b3h_F4e-38138207372Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00485DAPTransfer from AT5G03150Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264716.10.0PREDICTED: zinc finger protein JACKDAW
RefseqXP_010264717.10.0PREDICTED: zinc finger protein JACKDAW
TrEMBLA0A1U8ACW80.0A0A1U8ACW8_NELNU; zinc finger protein JACKDAW
STRINGXP_010264716.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.11e-107C2H2-like zinc finger protein