PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012609-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 278aa    MW: 30736.1 Da    PI: 4.9109
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012609-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.1e-08170217455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++iN+++  L+ l+P +     k +  a +L + ++Y++sLq
  NNU_012609-RA 170 SHSLAERVRREKINDRLRCLQGLVPGC----YKTMGMAVMLDEIINYVQSLQ 217
                    8*************************9....35599999*********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.81E-11164221No hitNo description
SuperFamilySSF474592.62E-16164234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.415166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-16166228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-5170217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-8172222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MADFAGESQS FRPSFPFLEI DSNMELMMNQ LAELNPSGFL NPNLNIQSFM GFSNDNFFVQ  60
QQPDFSTSFA DNSTAGVPHR YGPNALPVIQ SVASAGDAVD HESKKQMMVS ESSSGNSSAP  120
VSETGSGGDD KTKRKNSFGR GKRKRNNENE GETPKEVIHV RARRGQATDS HSLAERVRRE  180
KINDRLRCLQ GLVPGCYKTM GMAVMLDEII NYVQSLQNQV EFLSMKLSAA SSFYDFNSEM  240
EALETTQGAN AYEAQEIERV VRDGGYGGLT CFNSTWPF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265101.10.0PREDICTED: transcription factor bHLH75-like
TrEMBLA0A1U8ACA40.0A0A1U8ACA4_NELNU; transcription factor bHLH75-like
STRINGXP_010265101.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.12e-57BR enhanced expression 1