PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012654-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 343aa    MW: 38183.9 Da    PI: 4.6868
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012654-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-19120168153
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                    s+y+GVr+++ +g+W+AeIrdp    +r  r++lg+++taeeAa+a++aa k++
  NNU_012654-RA 120 SKYRGVRQRR-WGKWAAEIRDP----IRgVRVWLGTYDTAEEAAEAYEAASKSF 168
                    89*****998.**********7....246********************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-13120167IPR001471AP2/ERF domain
CDDcd000181.27E-18120153No hitNo description
SuperFamilySSF541711.96E-17120167IPR016177DNA-binding domain
SMARTSM003801.9E-22121184IPR001471AP2/ERF domain
PROSITE profilePS5103220.257121178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-24121169IPR001471AP2/ERF domain
PRINTSPR003676.7E-11122133IPR001471AP2/ERF domain
PRINTSPR003676.7E-11144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MPGPQRQLLN QDKVCKKQKK KQSFISEEME TKTMRKIRVI CYDPDATDSS SSEDETNERR  60
NGVGCKRLIR EIRVPISPFQ SSFAETESSS QDSNNGAKTP NKSGKNPSKR GLTRTPRSSS  120
KYRGVRQRRW GKWAAEIRDP IRGVRVWLGT YDTAEEAAEA YEAASKSFQI ESMSLSGGRI  180
KNNDGNHNTP SSSAAGSMTQ SCVSEDSESL FSHSSPSSVL DVSTAASHVA CAGSQTKEEQ  240
HSTRNAESQQ PQPEKHQPIS DFLEEEPLPV ISSPMAEDLE LSFELDSFLV NDFGHAFEDF  300
YDFSEIPLYG FEDRDPSDLP NFDFDLGAEE LAWIDESLNI ACP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-14122165347ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265156.10.0PREDICTED: ethylene-responsive transcription factor ERF118
RefseqXP_010265157.10.0PREDICTED: ethylene-responsive transcription factor ERF118
TrEMBLA0A1U8AR180.0A0A1U8AR18_NELNU; ethylene-responsive transcription factor ERF118
STRINGXP_010265155.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-23ERF family protein