PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_012699-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 428aa MW: 48730.3 Da PI: 7.6773

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_012699-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.8	1.2e-25	74	161	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA + GF++rk+ ++k+ + g +t+r+f Csk+g+ +++k++ + +++r+ t++gC+a ++++++++gk+++++le++HnH+l+ NNU_012699-RA 74 DFYQNYALKKGFTIRKDWKNKN-KLGVVTSRRFFCSKQGYWKPDKRD-KGVKKPRKDTKCGCRAFMTINLKENGKYVIAHLEKNHNHDLV 161 6***************9998.7888*************999.999**********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-22	74	161	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MYVHLILSTS AYSGSSHESS SSEKESNHNG GVARQSELES EKECENLECL DESNSQLKSP 60 EINMEFKSEE NAFDFYQNYA LKKGFTIRKD WKNKNKLGVV TSRRFFCSKQ GYWKPDKRDK 120 GVKKPRKDTK CGCRAFMTIN LKENGKYVIA HLEKNHNHDL VIPKKTRAAE SDAAFKYILG 180 HCDDWLNRVN DLIVNDPPNK YPTEKGHGST VQTEGEKISI DGTDYYVNID EGSQSVQVQG 240 IARNEECLRG NNKRTKIWNE KLPARRKTSS HVPSQNTSSN VDNNLLSNCS VIDSSQNQFE 300 QRHLASFNIN ENLQAYHPVT VPSQTHVEQD STPQLYVWES IFSNNSQPCQ ALCEALMRQE 360 KLLEYIGRQE ETTFQMSTGR GHTDMELRHF RPLRNAESDR KDGNRAGSVL KYCFSNLGIV 420 CAMQVCSG

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MYVHLILSTS AYSGSSHESS SSEKESNHNG GVARQSELES EKECENLECL DESNSQLKSP  60
EINMEFKSEE NAFDFYQNYA LKKGFTIRKD WKNKNKLGVV TSRRFFCSKQ GYWKPDKRDK  120
GVKKPRKDTK CGCRAFMTIN LKENGKYVIA HLEKNHNHDL VIPKKTRAAE SDAAFKYILG  180
HCDDWLNRVN DLIVNDPPNK YPTEKGHGST VQTEGEKISI DGTDYYVNID EGSQSVQVQG  240
IARNEECLRG NNKRTKIWNE KLPARRKTSS HVPSQNTSSN VDNNLLSNCS VIDSSQNQFE  300
QRHLASFNIN ENLQAYHPVT VPSQTHVEQD STPQLYVWES IFSNNSQPCQ ALCEALMRQE  360
KLLEYIGRQE ETTFQMSTGR GHTDMELRHF RPLRNAESDR KDGNRAGSVL KYCFSNLGIV  420
CAMQVCSG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010265219.1	1e-127	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_010265220.1	1e-127	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
Refseq	XP_010265221.1	1e-127	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A1U8AQJ7	1e-125	A0A1U8AQJ7_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A1U8AR70	1e-125	A0A1U8AR70_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X2
STRING	XP_010265219.1	1e-126	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-19	FAR1 family protein