PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012728-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 341aa    MW: 37754.7 Da    PI: 6.6799
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012728-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.21.7e-14161207354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  NNU_012728-RA 161 KSHSEAERRRRERINTHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 207
                    79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.863158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-12161207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14162214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-15162216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-13164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.47E-5171210No hitNo description
Gene3DG3DSA:3.30.70.2603.2E-4243307No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MCAKKEEDQG DCSQTIQSIQ GYQEQLLIHQ QQQLHQQYSD GFGGGSAGRG GGLLFPELSP  60
IIPWSLPPVH TFNPIQFPTN PGRDHDPFLL PPPPSYGGLF NRRASALQFA YDGPSSDHLR  120
LISDPHGPVV QPGSSPFGIQ AELSKMTAQE IMDAKALAAS KSHSEAERRR RERINTHLAK  180
LRSLLPSTTK TDKASLLAEV IQHVKELKRQ TSQIAEASPV PTEVDELTVD ASDEDGKFII  240
KASLCCEDRS DLLPELIKTL KALRLRTLKA EITTLGGRVK NVLFITGEEE PKNNEQQQNQ  300
QYSISMIQEA LKAVMERTAG DDPSSVKRQR TNINILEHRS L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265277.10.0PREDICTED: transcription factor bHLH30-like
RefseqXP_010265278.10.0PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y11e-101BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1U8AHK80.0A0A1U8AHK8_NELNU; transcription factor bHLH30-like
STRINGXP_010265276.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]