PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_012803-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HD-ZIP

Protein Properties

Length: 152aa MW: 17645.2 Da PI: 8.2723

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_012803-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41.5	2.3e-13	55	84	27	56
HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56 +++++eLA++l+L+ rqV vWFqNrRa+ k NNU_012803-RA 55 KAQKQELAEQLNLQPRQVEVWFQNRRARTK 84 5799************************98 PP
2	HD-ZIP_I/II	91.2	1.2e-29	54	118	25	89
HD-ZIP_I/II 25 eperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 e+ +K+ela++L+lqprqv+vWFqnrRARtk+kq+E d+e+Lk++y++l++en+rL+ke +eLr+ NNU_012803-RA 54 EKAQKQELAEQLNLQPRQVEVWFQNRRARTKLKQTEIDCEFLKKCYQTLSDENRRLKKEIQELRS 118 678************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	4.7E-4	24	90	IPR001356	Homeobox domain
PROSITE profile	PS50071	12.908	55	86	IPR001356	Homeobox domain
Pfam	PF00046	9.4E-11	55	84	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.8E-12	55	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.06E-11	55	95	IPR009057	Homeodomain-like
CDD	cd00086	1.92E-9	55	87	No hit	No description
PROSITE pattern	PS00027	0	61	84	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.4E-9	86	118	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	2.4E-17	86	130	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MEEEAAACDI GLSLGLGHRG EFVPRRNRQK PAAPAQFYAC LFPSDQPKEE IIEEKAQKQE 60 LAEQLNLQPR QVEVWFQNRR ARTKLKQTEI DCEFLKKCYQ TLSDENRRLK KEIQELRSTN 120 LNTSPFYIQL PKVATLAICP SCERIAKADY CR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	86	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010265395.2	1e-59	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	1e-38	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A1U8AD31	3e-58	A0A1U8AD31_NELNU; homeobox-leucine zipper protein HAT22-like
STRING	XP_010265395.1	3e-60	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-36	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]