PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012830-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family AP2
Protein Properties Length: 525aa    MW: 57134.8 Da    PI: 6.61
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012830-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71.1e-11169225155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  NNU_012830-RA 169 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 225
                    57*******************5444.2455536655.779999**************98 PP
2AP246.97e-15268319155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  NNU_012830-RA 268 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 319
                    57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-9169225IPR001471AP2/ERF domain
CDDcd000186.70E-20169235No hitNo description
SuperFamilySSF541713.73E-15169235IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-12170234IPR001471AP2/ERF domain
PROSITE profilePS5103217.477170233IPR001471AP2/ERF domain
SMARTSM003802.5E-23170239IPR001471AP2/ERF domain
PRINTSPR003672.2E-6171182IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18268329IPR016177DNA-binding domain
PfamPF008471.1E-9268319IPR001471AP2/ERF domain
CDDcd000182.22E-25268329No hitNo description
Gene3DG3DSA:3.30.730.102.9E-18269328IPR001471AP2/ERF domain
PROSITE profilePS5103219.019269327IPR001471AP2/ERF domain
SMARTSM003803.1E-34269333IPR001471AP2/ERF domain
PRINTSPR003672.2E-6309329IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MPLFPSISQT TPLIVTRTNT TSMDSSQNWL GFSLSNQQQL QHPSDSSQLC LFEAFDTNHK  60
RVDRVEEDGG SATANLSMFP VGPKLEDFLG VCGSSGAGAG TATGASMGQF PCENPASEPE  120
NGIYDSELKT IAASFLRGYS TEQTETEKPV VPVESASKKA VDTFGQRTSI YRGVTRHRWT  180
GRYEAHLWDN SCRREGQSRK GRQGGYDKEE KAARAYDLAA LKYWGPTTTT NFPVSNYEKE  240
LEEMKNMTRQ EFVASLRRKS SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF  300
STQEEAAEAY DIAAIKFRGV NAVTNFDMSR YDVKSIANSN LPIGSITSKS KASLESVSDN  360
KSNEGSKSDD SSVSFASQPS SSTLSFAIPI KPDPADYWSI IGFQNPSTSS SQNNVKNLGV  420
ESTAATLFQP STTNGASAFQ NLSPSFNMDF STTSSINETN DGFFNGGFLQ QQHQSNSIPL  480
ATPITVTGGN SYDGSGYGSW VTPLHAYQSG KPNLSVFQTP IFGME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265446.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-156AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A1U8AD750.0A0A1U8AD75_NELNU; AP2-like ethylene-responsive transcription factor AIL5
STRINGXP_010265446.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-145AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]