PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_012886-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 405aa MW: 44935.4 Da PI: 5.234

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_012886-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.3	2.4e-07	220	247	4	31
HHHHHHHHHHHHHHHHHHHHHCTSCCC. CS HLH 4 ahnerErrRRdriNsafeeLrellPkas 31 +h+ +Er RR++iN ++ L+el+P +s NNU_012886-RA 220 SHSLAERARREKINARMKLLQELVPGCS 247 8************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.17E-8	214	287	No hit	No description
SuperFamily	SSF47459	2.49E-11	214	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.306	216	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-11	216	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.6E-5	220	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.3E-5	222	288	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MERISCFDSR SEGCKDDKQE MAEDSFEFGD GILMTENLLQ EATVPGSSFT ALLGLPANQA 60 MELLQDPLSG KPQTVIAPEM WRDSRSGQED MRYTFNCSPT FPTDAALVER ASKFSVFAAA 120 QNSTDKCPVP SNSNENSLKP KSEPADSESN PSSCLVSSDP ATPSENQAST KRKEREKKVK 180 VPAKRSKNVE NESSKAGEAK DGEKLPYVHV RARRGQATDS HSLAERARRE KINARMKLLQ 240 ELVPGCSKVS SLFFVILNES RVIIISGTAL VLDEIINHVQ SLQRQVEFLS MRLAAVTPRI 300 DFSLDSFFAA ESGCVTPSSC PSTVTFEPLM WQQQQNQPLW EGDVLQRQMW ERDDSHSFLA 360 PENFLFSYNS ANSAGSRVVK RSSQQLSIPW GFDVYAVLAE TSRKP

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MERISCFDSR SEGCKDDKQE MAEDSFEFGD GILMTENLLQ EATVPGSSFT ALLGLPANQA  60
MELLQDPLSG KPQTVIAPEM WRDSRSGQED MRYTFNCSPT FPTDAALVER ASKFSVFAAA  120
QNSTDKCPVP SNSNENSLKP KSEPADSESN PSSCLVSSDP ATPSENQAST KRKEREKKVK  180
VPAKRSKNVE NESSKAGEAK DGEKLPYVHV RARRGQATDS HSLAERARRE KINARMKLLQ  240
ELVPGCSKVS SLFFVILNES RVIIISGTAL VLDEIINHVQ SLQRQVEFLS MRLAAVTPRI  300
DFSLDSFFAA ESGCVTPSSC PSTVTFEPLM WQQQQNQPLW EGDVLQRQMW ERDDSHSFLA  360
PENFLFSYNS ANSAGSRVVK RSSQQLSIPW GFDVYAVLAE TSRKP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010265771.1	0.0	PREDICTED: transcription factor bHLH48-like
TrEMBL	A0A1U8AIR5	0.0	A0A1U8AIR5_NELNU; transcription factor bHLH48-like
STRING	XP_010265771.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	8e-68	bHLH family protein