PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_012893-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 463aa MW: 50514.2 Da PI: 8.7812

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_012893-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.6	9.5e-13	391	436	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +AveYIk+Lq NNU_012893-RA 391 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 436 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.148	385	435	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.94E-16	388	445	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.22E-12	389	440	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.3E-15	390	446	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-13	391	441	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-9	391	436	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048573	Biological Process	photoperiodism, flowering
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MMFGGSEALT KDMNLLFPSP FKNSEELQSK SREVMNSDLH LHHHHQQHAR QSQQQQLGSG 60 LMRLRSAPSS LLANFIDGSS GNVEDGCEDF LHPRSSSPEA ESMFARFMSS GGSGSGGDSS 120 LPDPREIGEK PSALSPSTGA INHRNSQLAP TEREGKVVPQ HNGYSSLSHM MYQSQTQPPL 180 PSHSSATTTT DVDSSYRVMN SMTMDHPTQV KTAGGNLIRH SSSPAGLFSH LTAENGMRST 240 ERMVAENYLR SCYAVMRGMG NFHAGNGTNG EAASTTSRLK RQISFSSGNP DDGSFGSGNA 300 GNRGYIQGFP VGSWEDSALV SENVTGLKRI RDTNGGNQNG EAGSRPPMLA HHFSLPKTSV 360 EMAAMEKFLQ FQDAVPCKIR AKRGCATHPR SIAERVRRTR ISERMRKLQE LVPNMDKQTN 420 TADMLDLAVE YIKDLQKQVK TLNDNRANCT CSSKQKSYSN PTV

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MMFGGSEALT KDMNLLFPSP FKNSEELQSK SREVMNSDLH LHHHHQQHAR QSQQQQLGSG  60
LMRLRSAPSS LLANFIDGSS GNVEDGCEDF LHPRSSSPEA ESMFARFMSS GGSGSGGDSS  120
LPDPREIGEK PSALSPSTGA INHRNSQLAP TEREGKVVPQ HNGYSSLSHM MYQSQTQPPL  180
PSHSSATTTT DVDSSYRVMN SMTMDHPTQV KTAGGNLIRH SSSPAGLFSH LTAENGMRST  240
ERMVAENYLR SCYAVMRGMG NFHAGNGTNG EAASTTSRLK RQISFSSGNP DDGSFGSGNA  300
GNRGYIQGFP VGSWEDSALV SENVTGLKRI RDTNGGNQNG EAGSRPPMLA HHFSLPKTSV  360
EMAAMEKFLQ FQDAVPCKIR AKRGCATHPR SIAERVRRTR ISERMRKLQE LVPNMDKQTN  420
TADMLDLAVE YIKDLQKQVK TLNDNRANCT CSSKQKSYSN PTV

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00646	PBM	Transfer from LOC_Os08g39630	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010265791.1	0.0	PREDICTED: transcription factor bHLH130-like isoform X3
TrEMBL	A0A1U8AE20	0.0	A0A1U8AE20_NELNU; transcription factor bHLH130-like isoform X3
STRING	XP_010265785.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	7e-77	bHLH family protein