PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012946-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family SBP
Protein Properties Length: 263aa    MW: 28624.4 Da    PI: 8.6493
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012946-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP50.17.2e-163324776
                   SSEEETTT--SS--S-STTTT-------S- CS
            SBP 47 srfhelsefDeekrsCrrrLakhnerrrkk 76
                   +rfh+lsefD++krsCrrrLa+hnerrrk+
  NNU_012946-RA  3 TRFHQLSEFDQGKRSCRRRLAGHNERRRKP 32
                   69**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114115.067132IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.08E-12336IPR004333Transcription factor, SBP-box
PfamPF031109.8E-9331IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.0E-4319IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MNTRFHQLSE FDQGKRSCRR RLAGHNERRR KPPPGSLLAS RYGRLSSSLH EASGRVGSFL  60
MDFTAYPRQP ARDVWPTIRA GDRPPGNQPT ATGKFLPHLW QGSSENPPSN AFSHGSHPYL  120
QGPAGGTAFT SSVIPPGDCF AGVSDSGCAL SLLSTQSWGS RTRTTDLAAN NLNEEGAPMV  180
QSSAPHGAIP NNLTSNSWTF KGNECSSSSH EIPHDLGIRQ FSQSVDGQFS GELEFSQQGS  240
RQYMELGSSR AYDSSNNQMH WSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265853.10.0PREDICTED: squamosa promoter-binding-like protein 14
TrEMBLA0A1U8AS320.0A0A1U8AS32_NELNU; squamosa promoter-binding-like protein 14
STRINGXP_010265853.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.14e-32squamosa promoter binding protein-like 9