PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012947-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family SBP
Protein Properties Length: 345aa    MW: 37356.1 Da    PI: 10.1257
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012947-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP73.63.5e-2383130148
                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                    +CqvegC++dls ak y++rhkvC +hsk+p+v+v+gleqrfCqqCsr
  NNU_012947-RA  83 RCQVEGCKVDLSGAKAYYSRHKVCGMHSKSPKVIVAGLEQRFCQQCSR 130
                    6**********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.4E-2577130IPR004333Transcription factor, SBP-box
PROSITE profilePS5114117.40181150IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-2282130IPR004333Transcription factor, SBP-box
PfamPF031107.6E-1884130IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEMGSNSLAV SAASGSSDSL NGLKFGKKIY FEDVGIGSAA KSGGGSSSVS VSVSEGSTST  60
SMAPAPAPTK KGRGVVQGGQ PPRCQVEGCK VDLSGAKAYY SRHKVCGMHS KSPKVIVAGL  120
EQRFCQQCSR KIVRALGGVL LELNLRSLRV VVIKVAGIMP ENLPRSFDIF SDGAWYRVWL  180
ALEVEASLWG RRIEVGGDGE VTGWSTRGTQ GMVKKPVARD RVKEENEQLQ EVTNSQSLPL  240
KAINSKFFEL KTRSLGGXSC ANGSVGLNRV ALFEPTGRVR ELTHGPHATN NGPRDNLRCH  300
VERERVRELV DENFHLSSSK KGSAELNESK KSRTEREDRP LSWIH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.16e-23squamosa promoter binding protein-like 9